PGML0579, PGML0579 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0579
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTAT)5
Primer 1PGML0579_F: GGCAACGTGTCCTCAAATCT
Primer 2PGML0579_R: TGTTGGGCGATATAATCATAAA
Product Length155
Publication[view all]
CommentBAC_ID=FITB10492.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D06chromosomeD06:44346529..44346681 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018220.1chromosomeCM018220.1:39816154..39816305 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_06chromosomeD5_06:38540278..38540432 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
D10_06chromosomeD10_06:22595435..22595581 -Gossypium turneri (D10) genome NSF_v1_a2
Dt_chr10chromosomeDt_chr10:4553624..4553776 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D06chromosomeD06:40906938..40907090 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Scaffold2283supercontigScaffold2283:21280..21431 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D06chromosomeD06:42730411..42730563 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D06chromosomeD06:42658937..42659089 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D06chromosomeD06:39733424..39733576 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D06chromosomeGbar_D06:39887832..39887983 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D06chromosomeD06:40324431..40324582 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017654.1chromosomeCM017654.1:42611278..42611429 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017706.1chromosomeCM017706.1:40396119..40396270 +Gossypium darwinii (AD5) genome HGS_v1.1
D06chromosomeD06:43041990..43042142 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr06chromosomeChr06:38338371..38338525 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr10chromosomeChr10:40355146..40355309 +Gossypium thurberi (D1-5) genome CRI_v1
Chr_10chromosomeChr_10:28330371..28330518 +Gossypium harknessii (D2-2) genome ISU_v1
Chr10chromosomeChr10:42013691..42013841 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr10chromosomeChr10:26680137..26680288 +Gossypium aridum (D4) genome ISU_v1
Chr10chromosomeChr10:22529497..22529647 +Gossypium gossypioides (D6) genome ISU_v1
Chr10chromosomeChr10:27267865..27268016 +Gossypium lobatum (D7) genome ISU_v1
Chr06chromosomeChr06:90174891..90175045 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Sequence
>PGML0579 ID=PGML0579; Name=PGML0579; organism=Gossypium raimondii; type=genetic_marker; length=155bp
GGCAACGTGTCCTCAAATCTTAGCTCCCATATCTTTAAATCTATCAATTA
CTTATTTATTTATTTATTTATATTTTTTAGTTAAACTCACTTTTTAAGTT
GGGTTTACAATTTATGAAAATTAATTTTTTTAATTTATGATTATATCGCC
CAACA