PGML0578, PGML0578 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0578
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CAAAC)3
Primer 1PGML0578_F: AACCGGAAATTATCCAAGCA
Primer 2PGML0578_R: GTAGGCCAAGGATTAACGGG
Product Length372
Publication[view all]
CommentBAC_ID=FITB10660.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D01chromosomeD01:34062720..34063087 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:32268503..32268870 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:30665220..30665591 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
D01chromosomeD01:31866505..31866872 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:33090621..33090988 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:32317033..32317400 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:32867517..32867884 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D01chromosomeGbar_D01:32877385..32877752 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:32696980..32697347 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:32627758..32628125 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:34494406..34494773 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:32274850..32275217 -Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:33461291..33461658 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:25523433..25523804 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_01chromosomeB_01:56127118..56127486 -Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:31965973..31966340 -Gossypium thurberi (D1-5) genome CRI_v1
chr02chromosomechr02:26764348..26764699 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_02chromosomeChr_02:23977091..23977442 -Gossypium harknessii (D2-2) genome ISU_v1
Chr02chromosomeChr02:31706251..31706618 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr02chromosomeChr02:26952868..26953233 -Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:20324918..20325284 -Gossypium gossypioides (D6) genome ISU_v1
Chr02chromosomeChr02:25519750..25520117 -Gossypium lobatum (D7) genome ISU_v1
E01chromosomeE01:57373283..57373648 -Gossypium stocksii (E1) genome NSF_v1
Sequence
>PGML0578 ID=PGML0578; Name=PGML0578; organism=Gossypium raimondii; type=genetic_marker; length=372bp
AACCGGAAATTATCCAAGCACGAAATTATTCAAGCTCGAAATAACTAAAA
CAAGCAAGTCAAAATAATATGAACTAAAATAATCTAACTCGAAAATTTAA
CTATTAAATCTAAATGACCCAAATCTAAAATAACCTAAACCTAAAATGGC
CGAAAAATTTTAAAAACTCAACCCAATTCAATCCAAACCAAACCAAACCG
ATGCATCCTATCAAAATCTAACTGAGAATACAAGTTTTTTATTAGATATT
TATTAGTTAAATTTATTTATATCGAACAAATATTTTACCTTTAAAAAAAA
CAAATATAAATGGAATATCAAATAGGATGATCTCGAGTATATATATGTAA
AACCCGTTAATCCTTGGCCTAC