PGML0563, PGML0563 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0563
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GACA)4
Primer 1PGML0563_F: TGCCATGGTTTAATCCTGTTT
Primer 2PGML0563_R: GCTCGGATCACATTGCAGTA
Product Length336
Publication[view all]
CommentBAC_ID=FITB5676.x2
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:42459192..42459527 +
A07chromosomeA07:69740439..69740774 +
A01chromosomeA01:63774584..63774927 -
CM018215.1chromosomeCM018215.1:41579346..41579681 +
CM018202.1chromosomeCM018202.1:70850989..70851332 +
D5_01chromosomeD5_01:36478898..36479233 -
KI_01chromosomeKI_01:27511341..27511672 -
tig00003577_CRI-A2_v1.0.a1chromosometig00003577_CRI-A2_v1.0.a1:103966..104309 -
D10_01chromosomeD10_01:21014504..21014840 -
CM016614.1chromosomeCM016614.1:79240836..79241175 +
Dt_chr2chromosomeDt_chr2:21791117..21791452 -
Dt_chr2chromosomeDt_chr2:48735544..48735887 -
D01chromosomeD01:39652270..39652605 +
scaffold132_A01supercontigscaffold132_A01:140863..141206 -
Ghir_D01chromosomeGhir_D01:41325521..41325856 +
Ghir_A01chromosomeGhir_A01:74750482..74750825 +
D01chromosomeD01:43267262..43267597 +
A01chromosomeA01:75133488..75133831 +
D01chromosomeD01:42719340..42719675 +
A01chromosomeA01:73995939..73996282 +
D01chromosomeD01:40224328..40224663 +
A01chromosomeA01:71040776..71041119 +
Gbar_D01chromosomeGbar_D01:41776206..41776541 +
Gbar_A01chromosomeGbar_A01:72975809..72976152 +
D01chromosomeD01:42587009..42587344 +
A01chromosomeA01:72944897..72945240 +
CM017623.1chromosomeCM017623.1:42549316..42549651 +
CM017610.1chromosomeCM017610.1:71506356..71506699 +
CM017649.1chromosomeCM017649.1:43504584..43504923 +
CM017636.1chromosomeCM017636.1:77349173..77349516 +
CM017701.1chromosomeCM017701.1:41943536..41943871 +
CM017688.1chromosomeCM017688.1:69704280..69704623 +
D01chromosomeD01:43150230..43150565 +
A01chromosomeA01:76055283..76055626 +
Chr01chromosomeChr01:76577070..76577413 +
Chr01chromosomeChr01:79510511..79510854 -
Chr01chromosomeChr01:32007655..32007990 -
B_01chromosomeB_01:62748990..62749325 -
Chr02chromosomeChr02:40486781..40487116 +
chr02chromosomechr02:30983045..30983380 -
Chr_02chromosomeChr_02:28026516..28026851 -
Chr02chromosomeChr02:40715192..40715527 +
Chr02chromosomeChr02:30800109..30800459 -
Chr02chromosomeChr02:23671786..23672121 -
Chr02chromosomeChr02:29413825..29414168 -
E01chromosomeE01:71324278..71324607 -
F01chromosomeF01:52514595..52514932 -
Chr01chromosomeChr01:80214488..80214823 +
Sequence
>PGML0563 ID=PGML0563; Name=PGML0563; organism=Gossypium raimondii; type=genetic_marker; length=336bp
TGCCATGGTTTAATCCTGTTTATTCTCAATAGACCACGAGACAGACAGAC
AGACATGTAAAAATCTTGTTCAAAATTCAACCTTCTAGCATAAAATTCCT
TTCTTCAAACTATGGACAGGTATGCCAAAGAATTATATACAATATAGTTT
TTAACTGTTATATGATATGTTCTTTATGGAAAAGAAGGAAATCACATCAC
AACTTAGAAGCATTGCTGACCTCATCAAGTCGTCTTTGCCCCTCAAAGGT
GAAAGGCTTTAAAATTATAGCAACAGAAAATCCATTGGAAGCTCTTATTG
TTTTAAGAATTTCCATTACTGCAATGTGATCCGAGC