PGML0512, PGML0512 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0512
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAT)5
Primer 1PGML0512_F: GCTGCATTGGTTGTGAGAGA
Primer 2PGML0512_R: CAAATTTGAGCATTGTATAAGGATT
Product Length216
Publication[view all]
CommentBAC_ID=FITB3968.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:47590541..47590756 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:76104724..76104956 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:45199259..45199471 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:71264091..71264319 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:38691981..38692195 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:78723800..78724041 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:5075867..5076105 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:7701517..7701749 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold377.1supercontigscaffold377.1:901521..901753 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:5733137..5733352 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:45380287..45380502 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:70334778..70335010 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:47375003..47375218 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:75764297..75764528 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:46780786..46781001 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:77205281..77205495 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:47110527..47110742 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:77292103..77292335 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:45209138..45209353 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:74169404..74169636 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:45953899..45954111 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:71881040..71881268 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:48456014..48456229 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:73319242..73319470 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:46188240..46188455 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:73268816..73269045 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:47658039..47658254 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:76221728..76221947 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:46820242..46820457 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:73417615..73417835 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:48855255..48855470 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:79075442..79075674 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:78203681..78203925 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:81051677..81051918 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:44916487..44916702 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:64702217..64702435 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:45495785..45495999 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:37645975..37646265 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:31582416..31582630 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:46703052..46703296 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:34901273..34901483 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:26377091..26377305 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:32310779..32310993 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:6941185..6941393 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:65500366..65500578 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0512 ID=PGML0512; Name=PGML0512; organism=Gossypium raimondii; type=genetic_marker; length=216bp
GCTGCATTGGTTGTGAGAGAGTAGTCAAAAGAGCCATTTACAAGCTTAGA
GGTATATACCTGGACTTTGCTTCTGCTTCAATTTCTATTTATTTCGGTAT
CAAAAGAAAAAAAAGAATCACACGTGTCCAAATACAATTCCTTTTTTACT
TTATTATTATTATTATATAACAACGGTAAAATTTCAATTTTAATCCTTAT
ACAATGCTCAAATTTG