PGML0503, PGML0503 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0503
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAATT)3
Primer 1PGML0503_F: GCGTGTGGTGCTACATGTAAAG
Primer 2PGML0503_R: TTCAAGATTTAGTCAAGATGGCA
Product Length353
Publication[view all]
CommentBAC_ID=FITB4085.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:28145073..28145425 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:26766602..26766955 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:21518781..21519132 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016622.1chromosomeCM016622.1:37680407..37680752 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:22210216..22210568 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:26939088..26939440 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:28887674..28888026 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:26781859..26782211 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:27351869..27352222 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:30191885..30192238 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:27759334..27759686 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:28895539..28895893 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:28256830..28257183 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:29853339..29853691 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:27171542..27171893 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:27179602..27179962 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:19024530..19024880 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:28657754..28658107 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:20541353..20541706 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:18541945..18542297 -Gossypium lobatum (D7) genome ISU_v1n/a
F09chromosomeF09:42987594..42987939 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0503 ID=PGML0503; Name=PGML0503; organism=Gossypium raimondii; type=genetic_marker; length=353bp
GCGTGTGGTGCTACATGTAAAGTTTTTTTAAGGTATGAATATATCCTATT
ATTTTAACTTTTTAGGCTACACATGTAAGAAAATAATTGATACACCTTTT
AGACTACACATGTAAAAAAATAATTGATACACATTCTTTACTCAGATACA
TTCATAATTTGAAAAAAATTACACATACAATAAATTAAATTAAATTTTAT
ATTTATTTATTTTCTAAAATACTTTTTTATGTATATTAAAAGGTACCAAT
AGAATTAAAACATTGATACACATCTCATATTTTAATGAAACATAAATTTT
AATATTTTTAAATTTTATATAATTTAGAAATGCCATCTTGACTAAATCTT
GAA