PGML0500, PGML0500 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0500
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)12
Primer 1PGML0500_F: ACACATTCGGCTTATGTTCTTT
Primer 2PGML0500_R: CAACTCAGAACAGACGTTCATTT
Product Length222
Publication[view all]
CommentBAC_ID=FITB4211.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:15037917..15038117 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D09chromosomeD09:12038834..12039043 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D06chromosomeD06:27704016..27704224 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D11chromosomeD11:44180123..44180331 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:13834279..13834479 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018223.1chromosomeCM018223.1:10926450..10926659 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018220.1chromosomeCM018220.1:25790375..25790583 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:50501186..50501392 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:24130502..24130712 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_09chromosomeD5_09:11175516..11175737 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:25790575..25790782 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:16736177..16736385 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:16637324..16637531 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_02chromosomeD10_02:16629496..16629693 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:50585470..50585676 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_06chromosomeD10_06:36118677..36118885 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:25442041..25442249 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:40127998..40128206 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:11903345..11903545 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:83429535..83429743 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:35789276..35789484 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:36757705..36757914 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4474_D10supercontigscaffold4474_D10:49232..49432 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:11947927..11948136 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:26671355..26671563 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D02chromosomeD02:51102781..51102987 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:41356567..41356775 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:14255938..14256138 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D09chromosomeGhir_D09:11910274..11910483 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:52897530..52897736 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D11chromosomeGhir_D11:46241651..46241859 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:13951492..13951692 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:11513638..11513847 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:26277434..26277642 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:45943818..45944026 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:14474696..14474896 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:11541677..11541886 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:26901001..26901209 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:14427739..14427939 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D09chromosomeD09:11530338..11530547 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D06chromosomeD06:26467910..26468118 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D11chromosomeD11:43540418..43540626 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:13636041..13636241 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D09chromosomeGbar_D09:12174045..12174254 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D06chromosomeGbar_D06:25978671..25978879 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:51079797..51080003 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:37149729..37149928 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:43806126..43806326 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:14189998..14190198 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D09chromosomeD09:13317029..13317230 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D06chromosomeD06:25650898..25651106 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D02chromosomeD02:52400653..52400859 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:14098220..14098420 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017631.1chromosomeCM017631.1:11018152..11018361 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017628.1chromosomeCM017628.1:26574719..26574927 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017633.1chromosomeCM017633.1:45873188..45873396 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:14381160..14381360 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017657.1chromosomeCM017657.1:10807390..10807599 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017654.1chromosomeCM017654.1:26350367..26350577 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017650.1chromosomeCM017650.1:54722846..54723060 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017659.1chromosomeCM017659.1:46720578..46720778 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:14203702..14203902 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017709.1chromosomeCM017709.1:11319742..11319951 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017706.1chromosomeCM017706.1:26020972..26021186 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:14556825..14557025 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D09chromosomeD09:12009681..12009890 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D06chromosomeD06:27181560..27181768 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D11chromosomeD11:46092907..46093115 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:22453386..22453596 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:25618474..25618682 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:13884558..13884755 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:26289567..26289781 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:16427592..16427800 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:36496755..36496963 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:43848370..43848577 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:21932879..21933087 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:14047183..14047389 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:27219026..27219230 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:10916770..10916979 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:17114771..17114979 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:32443038..32443244 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:32435617..32435825 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:32476331..32476529 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:50488473..50488681 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:27423217..27423425 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0500 ID=PGML0500; Name=PGML0500; organism=Gossypium raimondii; type=genetic_marker; length=222bp
ACACATTCGGCTTATGTTCTTTTTAAATAACTAATATATATATATATATA
TATATATTCATTTGTATTAGTTGGTACTATATTATAGTGTTTCGAATTTG
AATATGTGAATATGTGAATATGAATATGAATGGATAGTTAAGTTCAAGTA
TATTTTGAGTTAAAAAAATTGTATGTAAATGGTTAAAATTCTTGAATTCA
AATGAACGTCTGTTCTGAGTTG