PGML0478, PGML0478 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0478
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTGATT)3
Primer 1PGML0478_F: TTGACATTATGGCATGGTGG
Primer 2PGML0478_R: CAATCATGGCTTAATTGGGTG
Product Length287
Publication[view all]
CommentBAC_ID=FITB4698.x2
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:5935274..5935559 +
D08chromosomeD08:25284369..25284654 +
D06chromosomeD06:52267962..52268248 +
A06chromosomeA06:67912759..67913044 -
CM018226.1chromosomeCM018226.1:5855126..5855411 +
CM018222.1chromosomeCM018222.1:23634809..23635094 +
CM018220.1chromosomeCM018220.1:47236549..47236835 +
CM018207.1chromosomeCM018207.1:65265022..65265307 -
D5_06chromosomeD5_06:45495778..45496063 +
D5_01chromosomeD5_01:32009334..32009613 -
KI_01chromosomeKI_01:22509462..22509744 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:71825038..71825323 -
D10_03chromosomeD10_03:24216796..24217086 +
D10_13chromosomeD10_13:10749252..10749537 -
D10_06chromosomeD10_06:15432182..15432473 -
Dt_chr8chromosomeDt_chr8:1946774..1947059 +
Dt_chr4chromosomeDt_chr4:15899484..15899769 +
Dt_chr10chromosomeDt_chr10:37425157..37425443 +
Dt_chr10chromosomeDt_chr10:37429862..37430148 +
scaffold334.1supercontigscaffold334.1:520832..521117 -
D12chromosomeD12:5909283..5909568 +
D08chromosomeD08:23608934..23609219 +
D06chromosomeD06:48511048..48511334 +
A06chromosomeA06:58623048..58623333 -
Ghir_D12chromosomeGhir_D12:5975721..5976006 +
Ghir_D08chromosomeGhir_D08:23869669..23869954 +
Ghir_D06chromosomeGhir_D06:50821291..50821577 +
Ghir_D01chromosomeGhir_D01:44444403..44444686 +
D12chromosomeD12:5841245..5841530 +
D08chromosomeD08:23336943..23337228 +
D06chromosomeD06:50187715..50188001 +
D12chromosomeD12:5982025..5982310 +
D08chromosomeD08:23091940..23092225 +
D06chromosomeD06:50041630..50041916 +
D12chromosomeD12:5938646..5938931 +
D08chromosomeD08:23548100..23548385 +
D06chromosomeD06:47321854..47322140 +
Gbar_D12chromosomeGbar_D12:5784705..5784990 +
Gbar_D08chromosomeGbar_D08:23562465..23562750 +
Gbar_D06chromosomeGbar_D06:47412299..47412585 +
Gbar_D01chromosomeGbar_D01:44701276..44701559 +
Gbar_A06chromosomeGbar_A06:64598056..64598341 -
D12chromosomeD12:5773841..5774126 +
D08chromosomeD08:23825657..23825942 +
D06chromosomeD06:47730767..47731053 +
CM017630.1chromosomeCM017630.1:23696629..23696914 +
CM017624.1chromosomeCM017624.1:45320113..45320398 -
CM017615.1chromosomeCM017615.1:68865942..68866227 -
CM017654.1chromosomeCM017654.1:50711234..50711520 +
CM017649.1chromosomeCM017649.1:46715040..46715392 +
CM017641.1chromosomeCM017641.1:70726711..70726996 -
CM017708.1chromosomeCM017708.1:23743248..23743533 +
CM017706.1chromosomeCM017706.1:47934889..47935175 +
CM017693.1chromosomeCM017693.1:67145217..67145502 -
D12chromosomeD12:6126217..6126502 +
D08chromosomeD08:23935975..23936260 +
D06chromosomeD06:50722715..50723001 +
A06chromosomeA06:71950902..71951187 -
Chr06chromosomeChr06:45255906..45256191 +
Chr01chromosomeChr01:26866813..26867092 -
Chr12chromosomeChr12:16683016..16683295 +
Chr10chromosomeChr10:47680985..47681270 +
Chr02chromosomeChr02:43350269..43350554 +
Chr13chromosomeChr13:11165113..11165398 -
Chr03chromosomeChr03:13552042..13552326 -
Chr10chromosomeChr10:49076855..49077140 +
Chr13chromosomeChr13:34327428..34327713 -
E10chromosomeE10:75681492..75681776 -
Sequence
>PGML0478 ID=PGML0478; Name=PGML0478; organism=Gossypium raimondii; type=genetic_marker; length=287bp
TTGACATTATGGCATGGTGGATCCATTGGATATAGTTGAAATGTCATAAG
ATTTGTGAGTAACTCACCATATTGATATGTTATTTGTGAGCAATGAGGCT
CTAGGTGGACTAATTTGGAGTAGATAAGGGAGTGTTGAGCTTGTGCCTCC
ACTGAACAGGACTGATTTGAGGTGATATAAAGGAGTGTGTGGCCTTCGCC
CACTCAATCTGGTATTGATTTTGATTTTGATTGGGAGTAAGGAGATCCGT
TTATCTAATGTATGATCACCCAATTAAGCCATGATTG