PGML0440, PGML0440 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0440
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AATA)3,(AG)7
Primer 1PGML0440_F: ACGACAGTCATGCTCACGAA
Primer 2PGML0440_R: GTAATCAAGGCTCTCGACGC
Product Length393
Publication[view all]
CommentBAC_ID=FITB2308.y2
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:1933389..1933781 +
A01chromosomeA01:2502271..2502665 +
CM018215.1chromosomeCM018215.1:1892526..1892918 +
CM018202.1chromosomeCM018202.1:1963564..1963958 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1958892..1959285 +
D10_01chromosomeD10_01:58714069..58714456 -
CM016614.1chromosomeCM016614.1:2828289..2828678 +
scaffold783.1supercontigscaffold783.1:203057..203449 -
D01chromosomeD01:1859256..1859648 +
A01chromosomeA01:1717771..1718165 +
Ghir_D01chromosomeGhir_D01:1907774..1908166 +
D01chromosomeD01:1852818..1853210 +
A01chromosomeA01:2154803..2155197 +
D01chromosomeD01:1899152..1899544 +
A01chromosomeA01:2267836..2268230 +
D01chromosomeD01:1698800..1699192 +
A01chromosomeA01:2219600..2219994 +
Gbar_D01chromosomeGbar_D01:1981498..1981890 +
Gbar_A01chromosomeGbar_A01:1935118..1935512 +
D01chromosomeD01:1894000..1894392 +
A01chromosomeA01:1956249..1956643 +
CM017623.1chromosomeCM017623.1:1999870..2000262 +
CM017610.1chromosomeCM017610.1:2490560..2490954 +
CM017649.1chromosomeCM017649.1:1825975..1826367 +
CM017636.1chromosomeCM017636.1:1996672..1997071 +
CM017701.1chromosomeCM017701.1:2139388..2139774 +
CM017688.1chromosomeCM017688.1:2020425..2020819 +
D01chromosomeD01:1897838..1898230 +
A01chromosomeA01:2265141..2265535 +
Chr01chromosomeChr01:1971717..1972111 +
Chr01chromosomeChr01:1891950..1892343 +
Chr01chromosomeChr01:1741496..1741888 +
B_01chromosomeB_01:2044189..2044581 +
Chr02chromosomeChr02:1953803..1954195 +
chr02chromosomechr02:1798739..1799271 +
Chr_02chromosomeChr_02:2006520..2006907 +
Chr02chromosomeChr02:2052611..2052997 +
Chr02chromosomeChr02:1616567..1616953 +
Chr02chromosomeChr02:1449963..1450352 +
Chr02chromosomeChr02:1675343..1675735 +
Chr01chromosomeChr01:197776477..197776871 -
Sequence
>PGML0440 ID=PGML0440; Name=PGML0440; organism=Gossypium raimondii; type=genetic_marker; length=393bp
ACGACAGTCATGCTCACGAACTCAAATAAATAAATAAAAATAAAAATAAA
AAGAGAAGAGAAGAGAGAAAGTAATTTACATTTCTGCAGCAGAATCTCCC
TTTGAATTTCCAAGAGTTTTTTGATCCGTAAAATATTTGGAAGGTACGTA
AGAGCTTTGTAATTGTGGATTGATCTCGTCGAAGCTTAGGTTAGGGTTTT
CTAAGGATCTGTTCAAGAGATCGATCGATTTTCGCGAAATCGATCGATCA
TGTTATCGAATCATTTTGAAAATGGAATGGATATGGCGAGGCTTGCTTGG
TCCCGGCTTCCACATTCAGAAGACGGTGAGCTTGACGGAGTCGGATTATT
GAGTACTTCAAGCAATAGGAACGGCGTCGAGAGCCTTGATTAC