PGML0390, PGML0390 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0390
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTTT)4
Primer 1PGML0390_F: CGAGCTTATTTCTTGGAAGGG
Primer 2PGML0390_R: AGGGTCGAATCCACAGTGAC
Product Length309
Publication[view all]
CommentBAC_ID=FITB5101.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:26476670..26476978 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:25032994..25033302 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:37149019..37149327 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:38612552..38612850 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:25282988..25283296 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:25229848..25230156 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:25221290..25221598 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:24529102..24529410 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:25382819..25383127 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:25348882..25349190 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:24929412..24929720 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:25273965..25274272 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:24925957..24926265 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:25432107..25432421 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:25585329..25585637 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:25547854..25548162 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:25043436..25043744 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:40847325..40847629 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_11chromosomeChr_11:18087204..18087503 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:25421624..25421932 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:19945053..19945355 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:15447597..15447911 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:19879447..19879755 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0390 ID=PGML0390; Name=PGML0390; organism=Gossypium raimondii; type=genetic_marker; length=309bp
CGAGCTTATTTCTTGGAAGGGAAGATCTAGTTCAAGGATCGATTCAATAT
TGAAGTACACCGAGACTAATACTAAGCTTAAAATAATATTTTATTTGTCC
ATTTATTTTATTTCTATTTTTGCATTTTTGAATCTATTTTTATTTTATTT
TTCGTATTTCTTTATTTTATTATCTTAATCAATTTAAACTCCCTATTTTT
ATTTTTATTTTTATTTTGAGCTTTACTACGACAGGACTGTGACCGCGACA
GCGATTCTGGTCACAGGAAAAGGCTAAATTAGGTAGCTAGTCACTGTGGA
TTCGACCCT