PGML0387, PGML0387 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0387
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)17
Primer 1PGML0387_F: AGTTTCCGAGGCCAACATTA
Primer 2PGML0387_R: TGATACCTTTCTGGAATGGAGG
Product Length159
Publication[view all]
CommentBAC_ID=FITB5091.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:8117660..8117794 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:8106640..8106773 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:7393521..7393654 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018215.1chromosomeCM018215.1:60045921..60046058 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:7558518..7558651 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:54888624..54888780 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_01chromosomeD5_01:53971369..53971510 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:2640733..2640898 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:59347097..59347231 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:59336075..59336208 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4477_D10supercontigscaffold4477_D10:37882..38016 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4477_D10supercontigscaffold4477_D10:26860..26993 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold326supercontigScaffold326:29650..29784 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Scaffold326supercontigScaffold326:40670..40803 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D01chromosomeGhir_D01:60396657..60396790 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold5041_objsupercontigscaffold5041_obj:985..1118 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:7751341..7751475 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:7863601..7863735 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:7874623..7874754 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:8049993..8050127 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:8061016..8061149 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold3257supercontigScaffold3257:9091..9224 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold2912supercontigScaffold2912:5619..5752 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:60294941..60295078 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold3116_ERROPOS142557supercontigScaffold3116_ERROPOS142557:13507..13640 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold780_obj_D10supercontigscaffold780_obj_D10:29534..29667 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:7716599..7716732 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D01chromosomeD01:60938007..60938144 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:7689482..7689617 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:7700505..7700639 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:7681009..7681143 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:7670005..7670139 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017649.1chromosomeCM017649.1:62715708..62715851 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:7825251..7825384 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:7984601..7984735 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:7995623..7995756 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Contig00257chromosomeContig00257:47264..47421 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:9028079..9028235 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:7659497..7659659 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:6500676..6500827 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0387 ID=PGML0387; Name=PGML0387; organism=Gossypium raimondii; type=genetic_marker; length=159bp
AGTTTCCGAGGCCAACATTATATATTGCATATATATATATATATATATAT
ATATATATATATGCATATAAAAGTGCTGCTATTATATATTGCATATATAC
AATTGGCACTTTTTTAGTTCTTTTTCTATAGTGATATCCTCCATTCCAGA
AAGGTATCA