PGML0386, PGML0386 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0386
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TC)7
Primer 1PGML0386_F: AAATCTCGTGGAAGTTGCTTT
Primer 2PGML0386_R: CCATTTCTCCTCCCACATTG
Product Length92
Publication[view all]
CommentBAC_ID=FITB5011.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:55361442..55361532 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:53280682..53280770 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:90990719..90990806 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:48774178..48774269 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:94471965..94472052 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:2891972..2892061 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr9chromosomeAt_chr9:48318717..48318805 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:84975280..84975367 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold5157supercontigscaffold5157:9407..9494 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D07chromosomeD07:52445440..52445530 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:56447531..56447621 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:94906296..94906383 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:55707913..55708003 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:93892836..93892923 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:56074888..56074976 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:93913607..93913694 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:52404920..52405010 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:90424183..90424270 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:53648265..53648353 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:90130243..90130330 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:54321883..54321973 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:92310604..92310691 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:54255038..54255130 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:93980598..93980685 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:55231268..55231358 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:96930217..96930304 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:54335410..54335500 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:92318636..92318723 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:56667648..56667738 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:96078843..96078930 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:97824489..97824576 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:99121143..99121230 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:2699162..2699253 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:82977951..82978036 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:53167428..53167517 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:38100653..38100742 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:52892326..52892417 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:40164666..40164750 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:38774865..38774954 -Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:79828313..79828400 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0386 ID=PGML0386; Name=PGML0386; organism=Gossypium raimondii; type=genetic_marker; length=92bp
AAATCTCGTGGAAGTTGCTTTACTCTCTCTCTCTCTCCCCTTCCCTCCCT
CTGCAAGCAAGCAATTATATTACAATGTGGGAGGAGAAATGG