PGML0384, PGML0384 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0384
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAAT)3
Primer 1PGML0384_F: CCAGGTAAGCCCTTCCTTTC
Primer 2PGML0384_R: GTGTCAGACCACCTGCAAGA
Product Length281
Publication[view all]
CommentBAC_ID=FITB5025.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:11256028..11256310 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:18534259..18534539 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:17297432..17297713 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:45031236..45031516 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr11chromosomeAt_chr11:26948940..26949220 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:16586663..16586943 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3729_D01supercontigscaffold3729_D01:12491..12773 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold27245supercontigscaffold27245:184..464 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:17280972..17281252 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:11680587..11680869 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:17722889..17723169 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:11442481..11442763 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:17266638..17266918 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:11210419..11210701 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:17879359..17879639 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:11570283..11570565 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:17833207..17833487 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:17124832..17125113 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:17617556..17617837 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:17499691..17499969 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:12356898..12357180 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:17818387..17818669 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:17658189..17658469 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:11889050..11889332 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:17970985..17971265 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10657764..10658051 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:17109593..17109873 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:11484914..11485194 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0384 ID=PGML0384; Name=PGML0384; organism=Gossypium raimondii; type=genetic_marker; length=281bp
CCAGGTAAGCCCTTCCTTTCTTTTTTGTTATATTTATTTAGTACGTGAAA
ATAAAAAAATCAAACAAAAAAAGAAAAAATAAAAATAAAAATTTCACCTC
TGAAAATCAGTGTTCTGTTTTCTTTTCTTTTTTATTACTGTTCGTCAAAA
GCCGGAGAAGAGAATACATTGATATTTCATGGCTTTTTATAGCCGATTTA
CAGAACTGTTCATTTCTTCCTTTTTTTTTGTCTATTTGCTATTTGTTGGT
TTTTGTCTTTTTCTTGCAGGTGGTCTGACAC