PGML0380, PGML0380 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0380
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTCG)3
Primer 1PGML0380_F: GATGCTAAGATTCCACCGGA
Primer 2PGML0380_R: GATCACTTGCCTCGCCTTTA
Product Length225
Publication[view all]
CommentBAC_ID=FITB1143.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:31436822..31437046 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:29916007..29916231 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:28389170..28389394 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:65214800..65215024 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:27568337..27568561 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:29679313..29679537 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:30894614..30894838 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:30203781..30204005 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:30427479..30427703 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:30669474..30669698 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:30527838..30528062 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:30355382..30355606 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:30397944..30398167 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:32171705..32171929 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:29940657..29940881 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:31207274..31207498 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:23918932..23919155 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:29575553..29575778 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:25519623..25519846 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:24073090..24073314 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0380 ID=PGML0380; Name=PGML0380; organism=Gossypium raimondii; type=genetic_marker; length=225bp
GATGCTAAGATTCCACCGGATGGGATGTTACAGACTTCACATAAGAATGG
CAAACCCATTTCGCAATTCAGTGACCTTTCCAAAGCTTTTGTTTAACTTA
TGTTTTGTGCGTGTGATGTGGTTATTCTTTCTTATATATTCACTGAGTTC
ACAAGAACTCGCTCGCTCGCTCCTAACATTACAGATAGTTAGATCGCATG
GGTTGTAAAGGCGAGGCAAGTGATC