PGML0374, PGML0374 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0374
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GTATAT)3
Primer 1PGML0374_F: CGTATCCATTTAGAACACACGTT
Primer 2PGML0374_R: TTTCTGTTCAGCACTGCCAC
Product Length334
Publication[view all]
CommentBAC_ID=FITB1042.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:15987306..15987639 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:29732127..29732460 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:15111460..15111799 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:32182534..32182867 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:14964084..14964417 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:27586480..27586807 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:15116064..15116403 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:55144557..55144889 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:39165780..39166113 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:39262202..39262535 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:15300865..15301198 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:23586947..23587280 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:15500617..15500950 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:30932989..30933322 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:15162972..15163305 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:31532108..31532441 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:15729621..15729954 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:30681807..30682140 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:14883241..14883574 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:31418943..31419276 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:15085718..15086057 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:32163201..32163534 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:14688179..14688518 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:32270915..32271248 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:15162358..15162691 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:32164110..32164443 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:15915754..15916087 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:27781245..27781578 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:15314711..15315044 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:32160457..32160790 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:15925835..15926168 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:32222489..32222822 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:26899034..26899367 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:28106327..28106654 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:14884990..14885322 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:15420417..15420750 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:13009629..13009968 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:12158763..12159106 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:15479390..15479722 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:12824633..12824966 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:9328260..9328593 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:12147196..12147529 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr13chromosomeChr13:128073718..128074050 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0374 ID=PGML0374; Name=PGML0374; organism=Gossypium raimondii; type=genetic_marker; length=334bp
CGTATCCATTTAGAACACACGTTATCATTAACCTGATATAGCATTCCATA
GTAATAAGGTAAATCCCACATATAATTCAATATATATAACATTATATCAA
GTAGTATATGTATATGTATATATCATTCAAGACATTACCAACCACATACG
TTATATCAAATTAATACCATTCATATCATTTAATCATCATATATCATTTG
AATGTATTCTCATAATAATTTAACATACATTTCCCTTTCTCTGTTTATCC
AATATCTCGATGAACATTAGTAATTCGATTCGAATACTTGGGTAATTACA
TCTCACCAGGGAACGTGGCAGTGCTGAACAGAAA