PGML0241, PGML0241 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0241
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AATTAT)4
Primer 1PGML0241_F: AGCCACTGTCTCTCTGGGAA
Primer 2PGML0241_R: TGCAATTCGTAACTTGCTGA
Product Length397
Publication[view all]
CommentBAC_ID=FITB1367.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:55570994..55571397 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:98299101..98299504 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:95716235..95716638 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:11521365..11521760 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:18677581..18677984 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016623.1chromosomeCM016623.1:123519625..123520028 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:58167465..58167868 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:6926448..6926851 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:52947754..52948157 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:87744062..87744465 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:87745770..87746173 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:55461661..55462063 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:101513300..101513703 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:55482369..55482772 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:102431740..102432143 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:54158109..54158512 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:101636859..101637262 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:52453152..52453555 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:96731387..96731790 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:96020465..96020868 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:97636982..97637385 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:53072983..53073386 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:97321641..97322041 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:55118342..55118745 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:104891465..104891868 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:99064382..99064785 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:55519101..55519504 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:104699924..104700327 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:111670499..111670902 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:105667429..105667832 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:50821881..50822277 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:52145925..52146328 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:43435207..43435608 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:53664798..53665204 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:37505111..37505514 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:29061794..29062197 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:37189569..37189972 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0241 ID=PGML0241; Name=PGML0241; organism=Gossypium raimondii; type=genetic_marker; length=397bp
AGCCACTGTCTCTCTGGGAAACTTTGAGAGAGTACTCTTGACTTTATGTA
ATTAATGTAAAGTAACATTATTCAAAATAATAACTAATTAACATAATAAA
ATTTTCAAGTAATTACTATATTTTACATCAATAAAATTAACAAAACTTTT
ATTTATGTCAAAATTTCGAAACTATAAATTATAATTATAATTATAATTAT
CACAACATTTTTACTATATTTTATGCTTAGAGTTCTATTCAAGTAATAAC
TCTATTTTAAAATTAGCACAATTGTAATTTAAATTCTAATTATTATTATT
CTATTAAGAAGAGAGAACATAAAATAGTAACTAACTAACCATCAATCTTG
GTGTCACAACTCCATTTGTATCTGCATTCAGCAAGTTACGAATTGCA