pAR09B03, pAR09B03 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR09B03
Genbank IDCA993649
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993649
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:21366434..21367177 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:19585514..19586257 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:21709307..21710049 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:29123036..29123779 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:20113811..20114554 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold1210supercontigScaffold1210:664029..664772 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:19977040..19977783 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:20480213..20480956 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:18813984..18814727 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:21387519..21388262 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:19732822..19733565 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:19552752..19553495 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:21073143..21073877 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:20192795..20193534 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:19764777..19765520 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:20619465..20620208 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:20741578..20742321 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:21978721..21979464 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch01_At.01N/A92.1PAR09B03aView
2Palmeri x K-101, F2 (2007)AD_ch15_Dt.01N/A81.6PAR09B03bView
3Palmeri x K-101, F2 (2007)AD_ch21_Dt.11N/A56.9PAR09B03cView
4AD-genome wide Reference Map (2009)AD_ch01_At.01N/A104par09b03View
5AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A128par09b03View
6AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A197par09b03View
Sequence
>pAR09B03 ID=pAR09B03; Name=pAR09B03; organism=Gossypium hirsutum; type=genetic_marker; length=667bp
TTTTTTTTTTTTTTTTTTTTTAATTATTATAATGACATTAAAAACATTAA
ATATACATACCTTCTTTTTTCTTTCTTTTCTTTTTTAACTTACAAGCAGG
AAAACAGACGCAGAAATTTATATGATGTATGCAACCCCAAAAAGAAAAAC
AGAGAACAGACAGTTCCAACAAATTGATAAACCACACAATCTCTACACAT
CTTTTACTTGAAATGCATTATATTGATTCATTAATTGGGAGCAGTGGTCT
CTTTTTCCTTCTCGTCCTCTGTTTTGGAGTGGTAACCAGGAATTTTCTCC
TTGATTTTCACCAAAAATCCCTTCTTCTCTTTTGTCTCTCCTTCATGGTG
GTCGTTCTCAATTGGGGCAGCAGCAGCTGGTGGTTGGGTGGTGTCCTCTT
CATCTTTCTTATGCTGTCCTGGGAGTTTGTCTTTGATCTTATCCATGAAA
CCCTTCTTTTCCGGCGTCTCTGAGTGGTGAACTGTTGCTACCTCATCGCA
CTTCTCCACTGGGACTGCACTGTCCTGTTCTTTCTTTCCCTTCTCCTTTT
TCTTCTTCTTCTTCTTCTCTCCGCCTTCACCTTCTTCCTCGTCACTAGAA
GAGCTGGAGCTGCTATTGGATAGGTGAAGCTTGTCCAGGAGACTGTGTTT
CTTCTCATCTTCCTTAT