pAR0643, pAR0643 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0643
Genbank IDCA993234
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993234
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:61926086..61926652 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:62272152..62272718 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:91310981..91311547 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:25166756..25167322 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr12chromosomeAt_chr12:94804742..94805308 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:57159115..57159681 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:66844522..66845088 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:66560975..66561541 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:64268490..64269056 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:60460371..60460937 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold846supercontigscaffold846:823023..823589 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:62105895..62106461 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:63609097..63609663 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:63619412..63619978 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:45585665..45586231 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:67226286..67226852 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:63148363..63148929 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:67395624..67396190 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:44408726..44409292 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:42994968..42995534 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:36452455..36453020 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:40764861..40765427 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:26260060..26260626 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:42086336..42086902 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:26928126..26928693 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:22390148..22390704 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05_6305557chromosomeChr05_6305557:16..583 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:82854895..82855461 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:73477605..73478173 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Seaberry, F2 (2000)AD_ch22_Dt.04N/A89.8pAR0643View
2AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A150pAR0643View
3TM-1 x WT-936, F2 (2005)AD_ch14_Dt.02N/A63.5pAR0643View
4AD-genome wide Reference Map (2009)AD_ch22_Dt.04N/A141pAR0643View
5Palmeri x K-101, F2 (2007)AD_ch22_Dt.04N/A59pAR643View
Sequence
>pAR0643 ID=pAR0643; Name=pAR0643; organism=Gossypium hirsutum; type=genetic_marker; length=582bp
TTTTTTTTTTTTTTTTTTTTACTTAATTATTACTGCAATATATTTAGCAG
AATAATAGGTAATTTATTACAGCATATTACACATATAAATGCATAGGAGT
CAACTCATTGACCATGCAACATACACAGAAAGATACATATTGACAGCAAG
GCTTAAGTAAATAAATACTAATAAGTTTTAATTATAATTTTATTTGCCTA
AGAAACCTTGAGCCATCTTCATGTAATCCCCAACACCACCACCACCAGCT
GCAGCAGTTTCAGAATCTTTGGCGGCGGCACCTGCTCCATGGGAGTCGGG
GTTGGTGGTGGGAGCTAAGTGACTGGTCTGGTATTGATGCAAGTAAGTCT
CAGCCTTTTCGACATATTGGCCAACACCCTTGTCCTTATCCAGCTTCCCA
TAGTGTTGGGCGGCACCCAAAAGATCAGCACCTGCACCAGCAACCTTACC
CTTGTCAACCTTGTCGCTTTCTTTGTTGAATGTGGATTTTGCTGCGTCCG
CCACCAGCTTAGCGCTAGACAGGAGTTCGGAGGTGCCTTTTTTAGTGTCT
CTCTCTGAAGCCATTGTTGAAGAGCTCTTTCT