A1838, A1838 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1838
Genbank IDCK640458
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640458
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:22686875..22687620 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:21748872..21749617 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:22241241..22241986 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:90176344..90177109 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:38946119..38946864 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:20069688..20070433 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:22282033..22282778 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:21634704..21635449 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:22314655..22315400 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:22479642..22480387 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:17170136..17170881 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1798supercontigscaffold1798:91980..92725 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:21417689..21418434 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:22108936..22109681 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:21898833..21899578 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:22255222..22255967 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:21640929..21641674 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:22654543..22655288 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:23757206..23757951 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:22153691..22154436 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:64213789..64214534 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:16241601..16242369 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:14249575..14250342 -Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:24086063..24086828 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:19085855..19086599 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:108574617..108575382 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch05_At.05N/A101.8A1838View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A114A1838View
3SMA-4 x A1-97, F2 (2005)A_SA_lg06N/A59.9A1838View
4TM-1 x WT-936, F2 (2005)AD_ch05_At.05N/A133.9A1838View
Sequence
>A1838 ID=A1838; Name=A1838; organism=Gossypium herbaceum; type=genetic_marker; length=747bp
TTACACTTTGCTTATCACTTCCCCAGAGGTGACAATACTGCCTCTTTTCG
CTTTATACATTATATTATCTGTGTACTTATTCTTCTGGGATAAGTTAACC
TGATTCATTGTTTTCATTTTGTCTGTTTTTAATTAAATTACTTTGTGAGC
TTATGTAAACTTATTATCCTCTTGCGTGGACTTCATGTCATTTTATTCTA
TTTTATCATACATGTAAAATTGATTTCTCATGACTGGCTTTTTTTGTTCT
CCTAAATAGGAAAGATACACGAAAAAATATGTTCAGATATTTCTTTGTTC
ACACAACTTTTCTGGCATACTTCCAGGAAATGTGTATAAAAGTTTGCTCT
TCCTTTATATTTGTAGTGTTTGTCAATATTGTTGATGATGAGTAATTNCA
TTGTTGTGGTAATGTATATCAGGGGAGAACTTGACATGCTGGCTGGTGGA
ATGATCGAATTTTCTTTGGACCCTAATCTCAACAAAACTGGAGATATTTG
GCACATATGCATTGAGGTAGTATTTCTAACAAGATTCTTGAAATAATTTC
TTTGTCTCTGAATTAGAATCAACTTCTCTTATTTCATTGTCTTTAATATG
CATACTTGAACAGTGGAAGCAACTCTTTAATTTTCTTGCCATGATGTAGT
CTGATTTCTGGATGTGTAGGATTTGCCTCGGAGCAATGTCCTCTATGGTT
ATCGCATTGATGGTCCCAAAGATTGGGACAAAGGGCATCGGTTTGAC