G1210, G1210 (genetic_marker) Gossypium raimondii

Marker Overview
NameG1210
Genbank IDCA994255
TypeRFLP
SpeciesGossypium raimondii
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994255
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:6774538..6775088 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:6676165..6676710 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:6181198..6181749 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:57646563..57647112 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:4551437..4551990 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:6897569..6898114 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:59012233..59012783 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:145032436..145032978 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold643.1supercontigscaffold643.1:637806..638357 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:52582506..52583051 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:6659245..6659795 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:6273483..6274028 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:6520556..6521106 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:6309624..6310169 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:6249572..6250122 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:6080547..6081092 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:6539597..6540148 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:6549905..6550450 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:6479463..6480014 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:6426983..6427528 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9271supercontigscaffold9271:41771..42322 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9271supercontigscaffold9271:46187..46732 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5562supercontigscaffold5562:56198..56749 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:6686928..6687479 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:6253024..6253569 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:6268328..6268878 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:6202036..6202581 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:6917316..6917867 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:6340642..6341187 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:7204692..7205243 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:6556863..6557408 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:6553592..6554141 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:6382643..6383188 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:6651215..6651765 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:6587020..6587565 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:124847463..124848008 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:123710028..123710573 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:5862944..5863493 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:100204987..100205538 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:6600573..6601124 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:4884075..4884625 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:5180393..5180943 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:6624706..6625258 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:4938089..4938640 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:5392348..5392897 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:8501735..8502269 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:6069296..6069846 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:196303531..196304073 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr05chromosomeG1210:1..550 .
Chr05:5847613..5848162 +		n/a
Chr11chromosomeG1210:1..550 .
Chr11:23519057..23519606 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch14_Dt.02N/A51.8G1210View
2AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A50G1210View
3AD-genome wide Reference Map (2009)AD_ch07_At.07N/A44G1210View
4TM-1 x WT-936, F2 (2005)AD_ch07_At.07N/A17.6G1210View
5TM-1 x WT-936, F2 (2005)AD_ch14_Dt.02N/A22.7G1210View
Sequence
>G1210 ID=G1210; Name=G1210; organism=Gossypium raimondii; type=genetic_marker; length=550bp
TAGAAAGTGAAAATAGATGAGCTCCTAACAGATTCCCACAGTAATAACAC
AAGGTAAATCCATCCATGCCATTATTTTCCTTTTCTTATCAAGAAGGTGA
GAGGAAACGATGACTCTTAGAAATTAATAAATGAAGGTGACAAAGTTGCT
TAAGCTTATGTTACTTGAACTTGAGTGTGATTATTGGATACAGGTACATG
TCTAACACGGGTATGTTCAAATATTTTTTAAGTTGTTCATGCATTTGGAG
GAACATATCCCGATACCCCTGTTAGAAATGTGCTAAACACAGATGACTCA
AGAAAATTGAAGGGTCAGAGCAACATAGGCTTAAGTAATAAATGAAGTTC
ATTGTGCCGATAAATTTCCATCACAATCAAAATCAACATACCAAAATAGG
CTTACCTACTACAGGTTGGATCCTCACCAGAACCATCACAGACCTTCTCA
ACTCTATAAACCAGACTTCCCAGTCCAAGGGAATACAGCCACACCTACAA
ATAGGATATAATTTAACAAACTTATCCATGATGTTCTACGTTTAATCAGG