G1237, G1237 (genetic_marker) Gossypium raimondii

Marker Overview
NameG1237
Genbank IDCA994263
TypeRFLP
SpeciesGossypium raimondii
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994263
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:65584174..65585232 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:65501004..65502062 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:108955965..108957023 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:63528923..63529981 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:63607369..63608427 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:107060693..107061751 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:2416639..2417697 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_10chromosomeD5_10:2509665..2510722 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:1910154..1911211 +Gossypioides kirkii genome ISU_v3n/a
D10_10chromosomeD10_10:2376974..2378031 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:141836990..141838050 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1611.1supercontigscaffold1611.1:47262..48320 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1227.1supercontigscaffold1227.1:193232..194291 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1227.1supercontigscaffold1227.1:144436..145494 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:61541754..61542812 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:97932729..97933787 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:65296880..65297938 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:65213788..65214846 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:111807747..111808803 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:64557580..64558638 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:112259952..112261010 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:63527312..63528371 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:63478412..63479470 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:111916560..111917617 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:61823564..61824623 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:61774677..61775735 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:106347990..106349048 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5969supercontigscaffold5969:51735..52793 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11908supercontigscaffold11908:16814..17872 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11908supercontigscaffold11908:21101..22160 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:62800650..62801709 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:107345606..107346664 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:63598432..63599491 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:108723865..108724923 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:63818216..63819275 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:63720602..63721660 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:108034405..108035463 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:64911140..64912199 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:115753894..115754952 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:64512662..64513719 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:110311556..110312614 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:66484301..66485359 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:66567470..66568528 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:115096900..115097958 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124933388..124934446 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120917536..120918594 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:59635143..59636201 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:59548332..59549390 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:3634710..3635768 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:61724105..61725162 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:63207270..63208329 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:34362555..34363611 -Gossypium gossypioides (D6) genome ISU_v1n/a
E10chromosomeE10:3971838..3972892 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:92160845..92161903 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:717878..718933 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeG1237:1..1059 .
Chr11:60305740..60306798 -		n/a
Chr11chromosomeG1237:1..1059 .
Chr11:60211406..60212464 -		n/a
Chr11chromosomeG1237:1..1059 .
Chr11:44596493..44597551 -		n/a
Chr11chromosomeG1237:1..1059 .
Chr11:44502029..44503087 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Gtr x Gra, F2 (2004)D.10N/A99.8G1237View
2Palmeri x K-101, F2 (2007)AD_ch20_Dt.10N/A135.2G1237View
3AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A9G1237View
4AD-genome wide Reference Map (2009)AD_ch05_At.05N/A203G1237View
5SMA-4 x A1-97, F2 (2005)A_SA_lg09N/A51.7G1237View
6TM-1 x WT-936, F2 (2005)AD_ch05_At.05N/A13.4G1237View
Sequence
>G1237 ID=G1237; Name=G1237; organism=Gossypium raimondii; type=genetic_marker; length=1059bp
GTGATGATGGATCTGTTCATTTATGGGATACCACTGGTCGTAACCCAAAG
GTTCTCTTCTCTCTGTCTTTCTTAATATTCTTGATGTTCTAAGCATATAT
GTAATCCACTGGCTTTTACAGGTCTCTTGGTTGAAACAGCACTCTGCTCC
GACAGCTGGCATTAGTTTCTCACCCTCCAATGATAAGGTCTCATTGTTTC
TTCTTTTCCTTATTAAGGCTTAATTAAAGGAATAGGCTGAGCTTTTCTGG
AAGGTTGAGATGAAGGAATTTTTTTTTAATGGTTAAGACATCTTTCAAAA
ATTGTTAACTATTCTGATATTTCAATTTTCTTTTTCCTTTTCAACAGATT
ATTGCTAGTGTTGGGTTGGATAAGAAGCTATACACTTATGACTCAGGGTC
TAGAAGACCCTCAGCTTTCAATTCATATGAGGCACCTTTTTCTTCATTGG
CATTTAAAGATGATGGTTGGACACTGGCAGCTGGTACTGGTAATGGTAGA
GTGGTGTTCTATGATATTCGGGGAAAACTACAGCCTTTTACTGTTCTTCG
TGCCTATAGTAGTTCGGAGGTTGGTTATCTTTTGCTCTATTATCGCTTTT
TAATATAAAAAGAGACCCAGGCCCTGATAAGTTCTTGTAGTTTGCACTTG
CTTTCTATTTTCCCTCAAGAACTCTAACTTGATATGGAATTTTGAATTGT
ATTTGTATAAAAGATTATGTTCTATAATGGAACTAATGTTATTAATTGGA
TGTCACTGCTTGCTTGTTTGTGCTCCAACTTCAACGTGTTTTGTGTAAAT
GGAAAGTAATAAGTCTTATTCCTTTAATCATTTTAAATCCTAAGTGTTTA
TAGCATCTGTCAGGCTGTTTCAAGTTTATGTTGGCAAAGATCAAAACCAG
CCTTTGTTAATGAGAGTACTTGCACTGCTGAGACTGCTCTTTTGGGAGGT
GCAATGGAGGATTCTGTTCTTATGCCAGACCCACTTCCATCTGTGACATC
AACAAACCTTTCATCATCCACAACAGTTTCTGGTTCCCGTATCACTGGCC
GTTCAGGTC