PXP0030, PXP0030 (genetic_marker) Gossypium barbadense

Marker Overview


Name	PXP0030
Genbank ID	AF060583
Type	RFLP
Species	Gossypium barbadense
Germplasm	Pima S-6
Source Type	Genomic
Publication	[view all]

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF060583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5749	supercontig	scaffold_5749:3849..4149 +
scaffold_5749	supercontig	scaffold_5749:5053..5352 +
scaffold_3382	supercontig	scaffold_3382:4423..4723 +
D02	chromosome	D02:22910659..22910960 +
scaffold_6666	supercontig	scaffold_6666:4425..5315 -
D5_03	chromosome	D5_03:43068047..43068347 -
scaffold5139	supercontig	scaffold5139:23724..24024 +
scaffold19944	supercontig	scaffold19944:1204..1505 -
scaffold19644	supercontig	scaffold19644:1224..1524 -
scaffold19644	supercontig	scaffold19644:617..918 -
scaffold10363	supercontig	scaffold10363:417..717 -
D02	chromosome	D02:21535925..21536226 +
D02	chromosome	D02:21532287..21532588 +
D02	chromosome	D02:21534106..21534407 +
D02	chromosome	D02:21537744..21538045 +
D02	chromosome	D02:21836637..21836938 +
D02	chromosome	D02:21893549..21893850 +
D02	chromosome	D02:21900812..21901113 +
Scaffold2332	supercontig	Scaffold2332:21265..22167 +
Gbar_A03	chromosome	Gbar_A03:65632845..65633142 -
scaffold21716_obj	supercontig	scaffold21716_obj:602..891 -
scaffold21716_obj	supercontig	scaffold21716_obj:1..292 -
CM017624.1	chromosome	CM017624.1:21643788..21644088 +
Chr03	chromosome	Chr03:19845028..19845329 +
Chr05	chromosome	PXP0030:1..300 . Chr05:20257063..20257364 +
Chr6	chromosome	PXP0030:1..300 . Chr6:37316550..37316851 +

Publications


Year	Publication
1998	Zhao XP, Si Y, Hanson RE, Crane CF, Price HJ, Stelly DM, Wendel JF, Paterson AH. Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton. Genome research. 1998 May; 8(5):479-92

Germplasm


Stock Name	Type
Pima S-6	accession

Sequence

>PXP0030 ID=PXP0030; Name=PXP0030; organism=Gossypium barbadense; type=genetic_marker; length=300bp
GGATCCTCTCTTTACTTCACGATTCTAGAAGAAACTTCACAACGCTCTGG
TTCGAGATTGAACTTTAGTACTGTGTTCCATCCTCAGACCGATGGTCAAT
TTGAGAGGGTGATTCATATACAAGAAGATATGATTTGAGCTATGTGATTA
ATTTCTGAGGTAGTTGGGAGGATTTTTTACCGTTAGTTGGGTTCGCCTAC
AATAACAGTTTCCAATCTAGCATCTAGATGGGACCTTACGAGGTTCGATA
TGGTCATAAGTGTCTACTCTGTTATATTAGACTGAGTTGGGTGAGCGACG

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PXP0030, PXP0030 (genetic_marker) Gossypium barbadense