G1171, G1171 (genetic_marker) Gossypium raimondii

Marker Overview
NameG1171
Genbank IDCA994244
TypeRFLP
SpeciesGossypium raimondii
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994244
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D01chromosomeD01:3971522..3972674 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:4082654..4083805 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:3927945..3929096 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
scaffold235.1supercontigscaffold235.1:1206364..1207516 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01chromosomeD01:3783600..3784752 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D01chromosomeD01:4065611..4066763 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:4059900..4061052 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:4187492..4188644 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt01chromosomeDt01:3810224..3811375 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold4369supercontigscaffold4369:290155..291306 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D01chromosomeGbar_D01:4392015..4393166 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:4383787..4384938 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017649.1chromosomeCM017649.1:4366400..4367552 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:4375008..4376159 -Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:4403867..4405019 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:3920189..3921340 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr02chromosomeChr02:4074865..4076020 -Gossypium thurberi (D1-5) genome CRI_v1
chr02chromosomechr02:3378325..3379479 -Gossypium armourianum (D2-1) genome ISU_v1
Chr02chromosomeChr02:3805785..3806931 -Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:3846848..3847994 -Gossypium lobatum (D7) genome ISU_v1
Chr02chromosomeG1171:1..1151 .
Chr02:3872259..3873410 -
Chr2chromosomeG1171:1..1151 .
Chr2:34046826..34047977 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1A1-97 x A2-47, F2 (1999)A_AA_lg05N/A90G1171View
2Gtr x Gra, F2 (2004)D.01N/A92.8G1171View
3Palmeri x K-101, F2 (2007)AD_ch01_At.01N/A147.2G1171View
4AD-genome wide Reference Map (2009)AD_ch01_At.01N/A60G1171View
5TM-1 x WT-936, F2 (2005)AD_ch01_At.01N/A125.7G1171View
6TM-1 x WT-936, F2 (2005)AD_ch19_Dt.05N/A17.1G1171View
Sequence
>G1171 ID=G1171; Name=G1171; organism=Gossypium raimondii; type=genetic_marker; length=1151bp
GCTGCTGGCTGGCTTTAAGTGCCCATATAAAGATTTCACAAGAATTGTGT
TCCTTCCTTACTTTTTGTCCTGCTATGATAACTCTCTCCCACCCACAACT
AGACTCTGGAATTTTCTTTCTGTTTCATTTCTTTACCTTTCTTATCTAAT
CCTTTGGTGCTTCAGTTTTAGTACAGAAGTTCATGTATTGTAGCAAAGCG
TAAGCAGGTTAACTTTTCTTATAGGAAATATTGGGTTGTTTGGTTTTTAG
GATTTGGTCTCAAAGGTGGGAATTTTTTTTTCTTTTTTTTTCACTACTTT
TTGCTATTTTAAACTGGTTAAGACTTAAGATAGATTCTTCGAGTTTAATA
AGCTTCCAATGTTTTAACTAAAAAAGATTCTTTTAATTTTTGCGTGCAAT
GGGTTGGATTTTAACCTGGATGATAGGTTGTTGCGGAATCTTGAAAAATG
AAGGGAACTACATAGCCGCGTGGATTTTATATTCTCTATAGTTCGGCTCT
GCTAATGTGTCATTCTTGCTTCTTTTTCCTATGCGATTTTTATACATAGT
GGATTTTGGTCCGAAAGAAATCTTGGGCTTGAATTATTATAAAAATTCAT
GGTAGACCCCATTTTTTCATCAAATTCAGTGGATCCCATTTTATTTGTTA
TCTTTTCATATTTTTCTGTCCTTTTGTTTGATTCTTTTTGGGAAGAAATT
TAGGCAGTAACAAGTTTTTAAAGACAATGGAAATCTTAGTAACTATTTGT
ACAAAATCATTGACCGTCGTCGTGTTTTTACAGTACGTAATCTTAGTAAG
ATGCAGAGCTTTCTCAGAATTATGCTGCTGATTAATACGCTTAATTTACT
AAAACAAAAATGCAGGACATAAAATTATTCTGAGAGCTTATAAAATTGGT
ATTGGTGGTTGGTTTCTAGATTGAGCGTATGCCTGGAAACAAGTACAACG
GTAATTCGCCGCATATACCAACTCGCACGGAACGCCTTTTGCGTGATAGA
GAGCTAAGGGAGCAAAGGAAAAGCAACAGAACTTCCCATTTAGATGAAGT
GATTGATATTCGTAAGGGGGCTGAAGTATCTGAGAATGGACCACGTTTTA
GAGAAGGTGACAACTCTAGGGCTGCTTTTGTCGAAAAATACTTGGAAGAC
G