G1262, G1262 (genetic_marker) Gossypium raimondii

Marker Overview
NameG1262
Genbank IDCA994269
TypeRFLP
SpeciesGossypium raimondii
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994269
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:12208139..12209176 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:16331002..16332039 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:11178742..11179779 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:15577330..15578367 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:11182614..11183650 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:6731454..6732485 -Gossypioides kirkii genome ISU_v3n/a
tig00001301_CRI-A2_v1.0.a1chromosometig00001301_CRI-A2_v1.0.a1:33280..34317 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:49008760..49009797 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:125435599..125436642 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:19485812..19486849 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:74817272..74818309 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:11392883..11393920 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:15166252..15167289 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:11947498..11948533 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:16606504..16607541 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:11590199..11591236 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:15923993..15925030 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:11932295..11933332 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:16488313..16489350 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:11443048..11444085 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:15906469..15907506 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1579supercontigscaffold1579:349302..350339 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:11330559..11331596 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:15501558..15502595 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:11138752..11139789 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:15551719..15552756 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:11843091..11844128 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:16437958..16438995 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:11533490..11534527 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:15935698..15936735 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:11374516..11375553 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:15895782..15896819 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:12104127..12105164 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:16646657..16647694 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:16245679..16246722 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:17004177..17005214 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:10969565..10970602 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:81756791..81757828 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:11541562..11542599 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:9919011..9920048 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:9213723..9214760 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:11805571..11806608 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:8153191..8154228 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:7080255..7081298 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:8595939..8596976 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:98606393..98607435 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:14534809..14535852 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:174581483..174582526 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr10chromosomeG1262:1..1038 .
Chr10:11065102..11066139 -		n/a
Chr10chromosomeG1262:1..1038 .
Chr10:11444075..11445112 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1A1-97 x A2-47, F2 (1999)A_AA_lg03N/A53G1262View
2Palmeri x K-101, F2 (2007)AD_ch25_Dt.06N/A77.5G1262View
3AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A49G1262View
4AD-genome wide Reference Map (2009)AD_ch06_At.06N/A209G1262View
5TM-1 x WT-936, F2 (2005)AD_ch06_At.06N/A45G1262View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch25_Dt.06N/A29.4G1262View
Sequence
>G1262 ID=G1262; Name=G1262; organism=Gossypium raimondii; type=genetic_marker; length=1038bp
GAAGAATGAGTGGCGGCAGGCTAAGCACTTCCAAATCAAGCCCAAGCCCA
AGCCCCAGTTTCTTCGCTACGCCGTTGCCTAATATCGAAAGTCCGAAACC
AGTGTCTCATCCCCCTCCTTCCTTCCGTAGGCTTCTCTCTCTAAATTCCC
CAGAATGGAAGCATGGTTTGATGGGTAGCCTCTCGGCTATAGTTTTTGGA
GCTGTTCAACCTGTTTATGCTTTAACCATTGGTGGAATGATTTCAGCCTT
TTTTGCAAAAAGTCACCAAGAAATGCAGGCTCGAATACGCACTTACGCTT
TCATATTTTCTTTGCTCACCTTGCTCTCTGTCATTCTCAATCTTATTCAG
CATTATAATTTTGCTTACATGGGCGAGCGGTTAACCAGGAGAATCCGAAG
TCGAATGCTGGAAAAATTATTGTCCTTCGAAGCCGCTTGGTTTGATGAAG
AAAAAAACTCTACTGGAGCTTTATGCTCGAGTCTGAGCAATCAGGCTTCG
ATGGTTAAGACACTCGTCGCAGACCGAATCTCATTGTTAGTTCAAACCAC
TTCTGCTGTTACCATCGCGATGATTATCGGGCTAGTCGTGGCTTGGAAGT
TAGCAATAGTGATGATTGCAGTCCAACCTCTCGCAATTATGTGTTTCTAC
ACACGAAAAGTTTTGCTTTCTAGCATTTCAACTAATTTCGTCAAGGCACA
AAATCAAAGTACTCAAATAGCAGTGGAAGCTGTGTATAATCATAGAATTG
TAACCTCATTTGGGAGCCTAGGTAAGGTTCTTCAACTTTTCGATGAGGCT
CAAGAGGAACCAAGGAAAGAGGCTAGGAAAATATCATGGCTAGCGGGGAT
TGGTATGGGGTCAGCTCAAAGCCTAACATTTATGTCATGGGCTTTAGATT
TTTGGTATGGAGGTACATTGGTTCAAAAGGGAGAGATATCAGCAGGGGAT
GTGTTTAAGACATTCTTTATCTTGGTGAGCACCGGAAAGGTCATAGCCGA
AGCTGGAAGTATGACCTCCGATCTAGCCAAGGGCTCAA