A1461, A1461 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1461
Genbank IDCA994105
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994105
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:13260292..13261267 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:7643876..7644852 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:12705967..12706942 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:120687828..120688803 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:56994462..56995440 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:2522984..2523960 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:55465914..55466895 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:12632310..12633285 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:7143919..7144897 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:12782362..12783337 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:7712485..7713461 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:12681162..12682137 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:7324117..7325093 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:12396865..12397846 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:7561750..7562726 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:13241458..13242433 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:7672379..7673355 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold15657supercontigscaffold15657:14272..15247 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:13002647..13003622 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:12820002..12820977 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:12848659..12849634 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:13217623..13218598 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:7435849..7436827 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:13038679..13039654 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:13306840..13307815 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:7562928..7563904 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:8220003..8220978 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:8677819..8678794 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:7168617..7169595 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:7115708..7116686 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:6731931..6732909 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:7327405..7328383 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E10chromosomeE10:104102436..104103413 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:7349573..7350550 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeA1461:2..975 .
Chr11:7088450..7089428 -		n/a
Chr11chromosomeA1461:2..975 .
Chr11:9339956..9340934 -		n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1A1-97 x A2-47, F2 (1999)A_AA_lg09N/A38A1461View
2Palmeri x K-101, F2 (2007)AD_ch20_Dt.10N/A55.7A1461View
3AD-genome wide Reference Map (2009)AD_ch10_At.10N/A9A1461View
4AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A145A1461View
5TM-1 x WT-936, F2 (2005)AD_ch10_At.10N/A0A1461View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch10_At.10N/A0A1461View
7TM-1 x WT-936, F2 (2005)AD_ch10_At.10N/A6.9A1461View
Sequence
>A1461 ID=A1461; Name=A1461; organism=Gossypium herbaceum; type=genetic_marker; length=975bp
CTGGAACTCAGGATCGGATCATCCGAGTGATCTACCTGAATCGGATCAAA
ACGAGAAGCTGAGGCAGGTCATGGATGATTTGGCTGCTACCTTCCAAGCC
AGAGAAAAGCAGCTATTAACTGGCAAGTTTTCATACATGTTTCTTCTTTA
ATTGCCTGCAATGTATTTTGTATTGTAGATTCCTTGTTATGAAGATTTAT
GCCATGAATTTGATTCAGATATGGAGCAGATGAAGGAAAAGTTTGCTAAA
TTACTGTTAGGAGAGGATATGTCAGGTGGAGGAAAGGGGGTTTCATCAGC
TTTAGCACTGTCAAATGCCATTACAAACCTTGCTGGTATTGGTCATTAAG
AATGTCCTTTTTAGTGTAATAGATAGAAAATTTCTCACTAATGTTCATCA
TTGTCTTATGCGATTCCCCTGTTGGGTTTCAGCTTCTGTGTTTGGTGAAC
AATCACGCTTAGAGCCTATGACAGCTGAAAGGAAATCAAGGTGGAGAAAA
GAAATAGATTGGCTCTTGTCTGTGAGTGATTGCATTGTTGAATTTGTTCC
TTCTCAACAAAAAGCCAAGGATGGATCAAACATGGAGGTACCTTTCTCTC
ACTATGCCTATATCTATATCCATATACATATGCATTACTTTTATTTCTTT
GATTTTTAGATAATGGTGACAAAGCAACGATTTGATCTTCTAATGAACAT
TCCAGCCCTCCGAACACTTGATACAATGCTTCTTGTAAGGATTATTTACA
GATATAAATTGAGCAATAAACTAGTAGTACCTCATTTAATGATTAATTTG
GTTTTAAAATGAACAGGATTGTCTGGATTCATTCAAAGACCAAGACGAGT
TCTATTATTTGTCAAAGGATGCGACAGATGAAGAGAAAGGGAACAGCAAA
AGAAAAGATGACAAATGGTGGCTGCCTACTGTTAAAGTTCCGGAACAAGG
TTTGTCAGATGCAGCAAAAAAGAAC