A1146, A1146 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1146
Genbank IDCA994005
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994005
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:5121281..5122092 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:79661488..79662294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:4754915..4755727 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:89958763..89959569 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:5203037..5203847 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:4677484..4678291 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr3chromosomeAt_chr3:44901966..44902772 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:24526026..24526837 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:4731685..4732496 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:73294004..73294810 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:4903560..4904371 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:97527912..97528718 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:4797009..4797820 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:98057282..98058088 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:4936475..4937286 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:95475969..95476775 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:4769093..4769903 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:93817270..93818076 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold29962supercontigscaffold29962:70291..71097 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20027supercontigscaffold20027:96493..97299 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:4795833..4796645 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:90024575..90025381 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:4916539..4917351 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:92177150..92177956 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:4806967..4807777 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:93926357..93927163 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:99263682..99264489 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:4890456..4891267 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:91924634..91925440 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:5041258..5042069 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:97634820..97635626 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:86904890..86905700 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:96523562..96524372 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:4576710..4577520 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:4676357..4677167 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:4131436..4132246 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:3317836..3318647 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:4929053..4929864 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:3466469..3467279 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:3086415..3087226 +Gossypium gossypioides (D6) genome ISU_v1n/a
E02chromosomeE02:6737679..6738490 +Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:4782908..4783718 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:130545664..130546455 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr03chromosomeA1146:1..811 .
Chr03:4807968..4808778 +		n/a
Chr3chromosomeA1146:1..811 .
Chr3:17916036..17916846 +		n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch02_At.02N/A91.5A1146View
2AD-genome wide Reference Map (2009)AD_ch02_At.02N/A84A1146View
Sequence
>A1146 ID=A1146; Name=A1146; organism=Gossypium herbaceum; type=genetic_marker; length=821bp
ATTGGCAGAAAGAAAATGGCATCACAAACAAAGGATTGTATTGAATTCAT
TTGGATTGATTGCAATGAAAGGATCATGAATTGATTATCAATCTCAATTG
ATAAATAAGTAGAGTATCTTACAGCTGCCTTGGCCTCATCCATCAATCTT
AAAACTCCAGGTCTAGGTTCCACCTGATCAAAACAATACCACTCTCTTTT
TATTCAATAATATGGATAACCAATTCAGAATCAATGAAGAGATAAAAGAA
AATGCAATGTGATAAACAATAATGTCTGCTTACAGTTCCAGATTTGATTA
TTTCTTTGTACCTTTCAGTCTTCCAATCCTACAAAGATGTAACAGCACCA
CGTACATAAGTTCTTCAATAAAGAGAATTTCACAATTCCTATACAAAGAT
CAAATTAAAGCTTAATTGGACCTCCATTCCCTGTTTCCCCTTGATTTCAT
TGGCATTGGCAGTCACTACATCAAAGCTATATAATTATTAATAATACCTG
AAGAGTGTCAATTAACTTAGCTCGTTCCTCATCACTCTCAGGAGGCGTCT
CAAATATGGTAGAAGATGGCCATCCATGTTCCTTGAAGTACCTTCAGGAA
TACCAAAAATCTCCATTAAACCGATCAGCGACAAGAAAAATTAAGAACAA
TAAAAGAAACCCAGAAATATTTAGAAAAAAGAAAGAAAGACCATCTCATC
TTGGGTTTGCCACCACCAATCAGGTTCTGGAGCACATCATANAATTGAAG
GTCCCAATTAAGGGGCTGTGAAGAAAGAGGGCAACCGACATTGAAGTGAG
CGAAAGCGTCGGTGTTAACTT