A1316, A1316 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1316
Genbank IDCA994067
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994067
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:27829008..27830147 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:21530698..21531837 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:33189956..33191096 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1462.1supercontigscaffold1462.1:303559..304698 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold10987supercontigscaffold10987:811..1950 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:22619546..22620685 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:24181315..24182454 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:24020515..24021654 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:22590774..22591913 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4279supercontigscaffold4279:262758..263897 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:22092161..22093300 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:22804287..22805426 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:21530851..21531990 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:23265643..23266782 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:22740988..22742127 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:24252837..24253976 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:28033261..28034400 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch21_Dt.11N/A11.7A1316View
2AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A27A1316View
3SMA-4 x A1-97, F2 (2005)A_SA_lg13N/A38.7A1316View
4TM-1 x WT-936, F2 (2005)AD_ch07_At.07N/A112.9A1316View
5AD-genome wide Reference Map (2009)AD_ch07_At.07N/A170A1316View
Sequence
>A1316 ID=A1316; Name=A1316; organism=Gossypium herbaceum; type=genetic_marker; length=1141bp
ATCTTTTGCATCAGTTAGCTTTTTTTTATATTTTCTTTTTCTTCTTTTCA
ACAGAATCAACTGAATATAAAACTTAAAACTTTGCTTTGCTTTTCTTTCT
TTGATCAAAATAAATATAAAACTTGCATCCAATTTTCAACCAGGTAATAC
ACGAGCCAGATATGACTAAAGCTGCATGTAAGAAACAAGTGTAAAAAAAG
AAGCCTATAGGACATGTGGAGAAACTGCATATCCATCAGCATACTGAGCA
AATTAAGACCAATCTGGAGGAGTTTTTAAATGTTAAATTAAATATACAAA
ACCTCTCTAAAGCACTGAGGTAATCATTAAACTTGATCTGTATACTTACT
TTACGCAAATTAAAAAGAAATGAATTTTAATATTCAATATAACTCGGCCT
AAGATTAGTATCTATTATTCTGCATCCATGAGGAAAAACGCTAAGCCTAA
AGAAATTGTAAAAAGACTGGAAAGTCCGATTGTAAATACTATATAAGACT
GTTTATAACAACAGCAGCAAAACTTTTTATAACAATTTTAAGCAGATATC
AAACTGTTCATGGATTAACACAGTTTCTCAACATTGTTTTAGGCAAAAAT
GGCCAACAAATTCATAGTAGTCTTTACATCACTGGAAGATCATATGAAGT
TAGAAATTGAAAATATTTAACCAAAAAAATATTCATGTCCATATAAAGAC
TGTAGTTCTACGAGTGTAAGAATATCATCATAGATTTAGATGTGAGTATC
AAAAACTGAGTATGAGCATGACATTGGTATGTATGTGTGTGTGTATATAT
CTAATGTAAGAGACTAAACATCAACAATTCGACAAAAACAACTTTCAACT
TTATCTACCTAAACAAACTAGAATTTAACAGTCATTGCCAAGAATTTTCC
CTCCTGAGTTCAGAGACCGGTAATAAAAAGGTACCCGACTACTACTGTTT
GACTTCGGTTTTCTTCTTCTGCCAAAGCCTGTGAAGAGCGCTATCGGCAT
CACCCTGTAAAACCAAACAAAGTAGATAAAACTAGATGTCTTTATAAAGA
ACAAACTACAAGGTATGAACACAGAATCTAAATTCTTAAAGCAACCCTAT
GAAATAGCTTCCTGACTGGAACTACCTGGACCTTGCGCTAT