A1418, A1418 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1418
Genbank IDCA994090
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994090
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:102138643..102139261 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:100092469..100093087 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr5chromosomeAt_chr5:49730051..49730669 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:94420924..94421542 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:105689885..105690503 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:99107579..99108197 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:96222717..96223335 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23948supercontigscaffold23948:20603..21221 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:99253692..99254310 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:101609129..101609747 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:100862024..100862642 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:108062506..108063124 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:102041694..102042312 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:107456181..107456799 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:6132268..6132886 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_03chromosomeB_03:6284261..6284879 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:34007629..34008249 +Gossypium gossypioides (D6) genome ISU_v1n/a
F03chromosomeF03:104991378..104992006 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:8263582..8264212 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Gtr x Gra, F2 (2004)D.03N/A76.3A1418View
2Palmeri x K-101, F2 (2007)AD_ch03_At.03N/A114.6A1418View
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A166A1418View
4SMA-4 x A1-97, F2 (2005)A_SA_lg08N/A2.3A1418bView
5SMA-4 x A1-97, F2 (2005)A_SA_lg08N/A109A1418aView
Sequence
>A1418 ID=A1418; Name=A1418; organism=Gossypium herbaceum; type=genetic_marker; length=621bp
AGGTAAAAAAAATATGATTATTTAGATTTGCATGCCATTTTCTTTTCTTT
TCTTTATATATATATAATATTTGCTTACTGACTTTGTGATGGTTGCTCGG
TTGTTGGTCGTTTATGGTACGGACCTGTGAAATTCAGTACAAGAAATTTA
GAATTCCACAATAATGGCAGCAAATAACTTTCAGCAAGGCAAGATGGAAA
AAGCATTTATTTACCTTTATTTCCAGATAGGCTTTCAAGCTTAGCGAAAA
GGCCGACAAGAGGTGCAGACCCGGAAAGTGTAGGCTCAGTTTGCTCGTAA
CTAGACCGATCATCGTCGAAGCCGCCGATCTGGTCGGGTCCTCCCACCAG
AGCTCCGTATATGACATTAGGATCCGCTTCAGGGCTGCGGTACCAGGCTT
CAAATGCTTGGACGCAGCTCACCAACGAAGGAAGAACAGAGATTCAGCCC
ATTGAAGCACCTCGGTGGTGAACTTGGGTCGGATATTTTGGTCCGTAACC
TACCAAGTAGCTCATTCACTTGGGATTTTTGCCTACAATGTAATCGGGCT
GTGACCTTGGCAAAATTTAGAACTTCATTTTGGTTGAATTTGGCCATCTG
GACAAGGTAGTTTAGCATTTG