A1536, A1536 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1536
Genbank IDCK640418
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640418
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:12352105..12352798 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:41515454..41516119 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:12203698..12204391 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:42029225..42029890 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:99976231..99976924 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:40344869..40345535 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:95337129..95337795 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:10071594..10072259 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:12440766..12441459 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:11010972..11011665 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:35474455..35475120 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:13379631..13380324 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:41423486..41424151 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:12674283..12674976 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:42895729..42896394 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:13169257..13169950 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:42347102..42347767 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:12550925..12551618 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:41800225..41800890 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:11417708..11418373 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5581supercontigscaffold5581:121480..122145 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4170supercontigscaffold4170:308063..308728 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4170supercontigscaffold4170:310100..310765 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
C30172546supercontigC30172546:212..905 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:12058938..12059631 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:40444594..40445259 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:12217061..12217754 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:42960342..42961007 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:12690784..12691477 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:41371285..41371950 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:13016608..13017301 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:45350167..45350832 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:12439050..12439743 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:42966568..42967233 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:13462719..13463412 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:43455987..43456652 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:12310322..12311015 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:105629643..105630336 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:38023652..38024322 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:12792583..12793249 +Gossypium anomalum (B1) genome NSF_v1n/a
chr03chromosomechr03:25891607..25892273 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:22061616..22062282 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:41406012..41406677 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:22510513..22511179 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:24011413..24012079 -Gossypium lobatum (D7) genome ISU_v1n/a
F02chromosomeF02:65160013..65160679 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeA1536:1..695 .
Chr03:35433103..35433773 -		n/a
Chr9chromosomeA1536:1..695 .
Chr9:14066101..14066771 -		n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1A1-97 x A2-47, F2 (1999)A_AA_lg05N/A35A1536View
2AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A48A1536View
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A192A1536View
4SMA-4 x A1-97, F2 (2005)A_SA_lg05N/A12.8A1536View
5TM-1 x WT-936, F2 (2005)AD_ch17_Dt.03N/A7.2A1536View
6Palmeri x K-101, F2 (2007)AD_ch17_Dt.03N/A51.7A1536aView
7Palmeri x K-101, F2 (2007)AD_ch18_Dt.13N/A152.5A1536bView
8PD 94042 x (AD)4-08, F2 (2016)AD_ch17_Dt.03N/A52.1A1536View
Sequence
>A1536 ID=A1536; Name=A1536; organism=Gossypium herbaceum; type=genetic_marker; length=695bp
ACTCGGGTGACCAGCTTCTGTCTGAGTTCACTCACATAATGAAACAACTT
AATACGTGACAGTCTTGATGATGTGAACTGGTTTCTCACATGTTTTCTGA
CCCACTGTTAAACCATTGTTTCAGGATGCCCGAAAACCTTTCGACAAGGC
TTCACTTACATATGATCAGGTGAATTTCAAATCAAAAAGTTAAACAGTTC
TTTTTTCTTTACCTTTTTAAACAGTTCTTTTTCTTTACCTTCTTTATGAT
TCAGTTCTATAGTATTAAGGATGCCTCTAATCATCGTGATGATTATTGAT
TGTAAGTTTAAATTTATTGATAATGAATGGGTAGAAAATTTCTGGACCTT
TGAAGCATATGCAGATCTTATTGAAAATAGAAAATACCATGTTACCAACG
ACATTTTGATAGGTTATTCCACATTCTAGAATACCATTTGTAAACTTTCC
TTGATGTTGATTTTTGATGACGCACTCAAAAACCAGAAGGGGGAATGGTG
GCAATAGGGAACAGGGCCAATTCAACATTATCATAAGGCCTCTGTTTGGT
TGTTTCCTTTGCTACTTGCTTTTGGTTTCTGTAAGTAAATGGAAAAAGGA
ATGTTTATATAAAAATAACCGATGATACTTTAAATAATTATAAATTAAAA
TGAAGGTTTATAAATAAAAGAATGGCCTGGTTTTTTTTCTACAAA