pAR0071, pAR0071 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0071
Genbank IDCA992692
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992692
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:44112876..44113645 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:61679548..61680317 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:41377500..41378269 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:62026369..62027138 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:25196309..25197077 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:30829041..30829823 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:91060740..91061509 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:25402475..25403244 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:60251057..60251826 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:36228817..36229586 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:95051828..95052597 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:41788819..41789588 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:56911388..56912157 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:43601896..43602666 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:66598113..66598882 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:44303129..44303898 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:66316208..66316977 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:45055605..45056374 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:64022131..64022900 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:42406493..42407262 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:60213828..60214597 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt02chromosomeDt02:41469167..41469936 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10287supercontigscaffold10287:412971..413740 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4979supercontigscaffold4979:297493..298262 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:42010388..42011157 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:61860143..61860912 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:43287485..43288254 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:63360824..63361593 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:44164578..44165347 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:63382835..63383604 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:45316884..45317653 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:66969245..66970014 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:42815801..42816570 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:62906890..62907659 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:45802248..45803017 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:67149084..67149853 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:44699779..44700546 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:43245078..43245847 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:38358296..38359065 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:36942207..36942976 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:40532398..40533167 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:29789236..29790005 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:26138471..26139240 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:41778116..41778885 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:26775961..26776727 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:22236531..22237300 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05_6346986chromosomeChr05_6346986:5018..5784 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:82450702..82451460 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:72934987..72935755 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:82733864..82734632 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr05chromosomepAR0071:1..671 .
Chr05:38846005..38846774 +		n/a
Chr5chromosomepAR0071:1..671 .
Chr5:17484991..17485760 -		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1A1-97 x A2-47, F2 (1999)A_AA_lg08N/A12pAR71View
2Gtr x Gra, F2 (2004)D.03N/A52.7pAR0071View
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A92pAR0071View
4Palmeri x K-101, F2 (2007)AD_ch03_At.03N/A80.2pAR071View
Sequence
>pAR0071 ID=pAR0071; Name=pAR0071; organism=Gossypium hirsutum; type=genetic_marker; length=671bp
ACAAAATTAATCATTTTAAAATATCTAATCTATCAGCTAACAGTTTTTAC
ACACACATTTCTTTTTTCTTGTGAATAGACCAATCCAAAATTTTGTCAAG
GGGAAAACAGTTCAGTGGAGATCTATTACTGAAATTGATACAGCATGGGA
TTCATATATACTTGCTGGTTTAAGAACCCACTCTCATTCACTTGAAGCTT
CCCTGAATCAGTGTATTGGTAAGGTATTTCTTGTAGCTGAAGTTTCTCAA
CATGGTCACCTGTGGTATTACTGTCTATGGGGTTAGGGAAATAGTCAAAG
CTGGAATTGTATGTATTTTCACCCAAAAGTTGGGAAATTGGACCCATGTA
ATCCAATTCCAGTAGTTGAGGAATCGAACTATTTGTCCTTGGGAATTTCA
ACATTTGTTGGGTTTCACTAGCATCATTGGAACACTGTGTCATGTGAATT
GGGGCATTTGATTCTTCCACTTGTTGATCCAAACCTCTTCCCCCTGGGTT
CTTCTTCTTGTAGATTCTGCAGAGGACCCAATCATCCAGTCTCATGGATC
CATTTTGCTTGGTGATTTGTTTACGTGAATCATTTAACCGATATTCATGC
ATAATCCAGTCAGTCTTGAGTCCCTTTGGTGGCTTGCCCTTGTAGAACAC
AAGAGCTTTCTTCACTCCAAC