PGML0233, PGML0233 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0233
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAA)10
Primer 1PGML0233_F: GCACAAATCCACCCTACGAT
Primer 2PGML0233_R: CTCAAGCAACACGATGCAGT
Product Length317
Publication[view all]
CommentBAC_ID=FITB1155.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:14748409..14748712 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:14114539..14114842 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:11244597..11244912 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:7141646..7141958 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:15757203..15757506 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:50952418..50952727 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:123877897..123878203 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr4chromosomeAt_chr4:91256494..91256797 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:13837226..13837529 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4310_D08supercontigscaffold4310_D08:25151..25459 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:14578458..14578759 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:14204589..14204892 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:14587452..14587755 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:14389993..14390296 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:14506994..14507297 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:14157163..14157466 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:11838768..11839082 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:14610834..14611137 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:15035890..15036193 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:14345867..14346170 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:15065647..15065950 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:15633832..15634131 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:15608539..15608841 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:11079453..11079769 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:15786824..15787165 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:11612839..11613148 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:10031261..10031657 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:9053015..9053324 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:11514710..11515022 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:8943253..8943560 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:7456498..7456804 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:8831954..8832443 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:19744142..19744454 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:13059185..13059494 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:169763312..169763618 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0233 ID=PGML0233; Name=PGML0233; organism=Gossypium raimondii; type=genetic_marker; length=317bp
GCACAAATCCACCCTACGATAGAAACTCGAAGATGGCCTTTAAAAAATAC
CAAGGTGACAAGTATGATTAATCCTAATGCCACTATGTTGAAAAATATAA
CCAGCTTTGTCGTGTATATCTGCAATGCAAATTGCTATTAAAATAATAAT
AATGATAATAATAATAATAATAAAAGATCAAGGTTTAAAAAGGGTATATT
GATACGTACCCTGGCTGTTTTGGTAGCATAAATCAGGTAAAAAATGAGAT
AAATGGACTCGATGCCGGACCCAATGGAGTTAATGGTGATGAGCATGACT
GCATCGTGTTGCTTGAG