PGML0231, PGML0231 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0231
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAT)4
Primer 1PGML0231_F: GAACTGGAATCGGATGTGCT
Primer 2PGML0231_R: GCTAAACGATGACGTTTCGAG
Product Length361
Publication[view all]
CommentBAC_ID=FITB5120.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:4185924..4186282 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:4172568..4172925 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:3925481..3925839 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:4351987..4352344 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:61995786..61996144 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:120081251..120081609 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:3905634..3905991 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:5254990..5255345 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:6146137..6146495 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:4205751..4206109 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:3941341..3941698 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:4162189..4162548 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:4036308..4036666 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:4282505..4282862 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:4144882..4145240 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:4340023..4340380 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:4060131..4060489 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:4491628..4491986 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:4022192..4022550 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:4121140..4121497 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:4020018..4020376 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:4393760..4394117 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:3995505..3995863 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:4480304..4480660 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:4078222..4078581 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:4527777..4528136 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:4075729..4076088 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:4401920..4402277 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:4160533..4160891 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:4553261..4553618 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:4531427..4531785 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:4357313..4357671 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:59479523..59479883 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:4376543..4376908 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:3828856..3829212 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:3590004..3590393 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:3585799..3586156 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:4039995..4040353 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:3126566..3127036 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:3052681..3053039 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:3348944..3349303 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:4759084..4759444 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:3779303..3779663 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0231 ID=PGML0231; Name=PGML0231; organism=Gossypium raimondii; type=genetic_marker; length=361bp
GAACTGGAATCGGATGTGCTTGGGAAGATAGAAAGCGCGAGCATATGGGA
AGTAAGGTTTGAGAAAGTGATTAAAAAAAAAAAAAGAGTTACCGGAGAGA
GTTGAACATGAAGACCAGCTGTTTTCGAGCTTTGATGATCGTTAGGGTTT
TAGACTCCATTTTCCAGCAAAGAAGAAAATAATCTGAAACTGTTCTTTGA
GGGGCGATTTTTTAGGGAATTTGTTTTCCTGAATTTTGCGGCCAAGAAAA
TATATAAAGCTTAAAACAAAAGCACACCTGAAAAAAATAAAATAAAATAA
AATAGATTCCAAATTACTAGTTTGTCCATTGCAATCATGTCTCGAAACGT
CATCGTTTAGC