PGML0230, PGML0230 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0230
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GAAA)4
Primer 1PGML0230_F: CCATCTTCTTCTTCATGCCG
Primer 2PGML0230_R: TTGCAAATTGGTAATGGGCT
Product Length161
Publication[view all]
CommentBAC_ID=FITB5072.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:12192963..12193135 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:49429959..49430119 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D12chromosomeD12:39523626..39523790 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:22276501..22276661 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:28007598..28007757 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:72073907..72074067 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:58818945..58819105 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:48825672..48825832 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:26526871..26527030 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:28770501..28770663 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:82104224..82104384 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:14244866..14245025 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:119208529..119208695 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:14718843..14719004 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:18763441..18763601 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:20697065..20697225 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:3109154..3109313 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:11774848..11775020 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:48313698..48313858 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:26105088..26105247 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:65352472..65352632 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:63522820..63522980 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:49639268..49639428 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:28090276..28090437 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:64848938..64849098 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:50261303..50261463 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:27237285..27237444 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:11975400..11975572 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:63634643..63634803 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:38797330..38797494 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:50954014..50954174 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:27739386..27739545 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:11651356..11651528 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:62620318..62620478 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:36575483..36575647 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:49668608..49668768 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:27275561..27275720 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:43532205..43532365 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:59339241..59339401 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:26352467..26352626 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:61829896..61830056 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D06chromosomeD06:12124814..12124979 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D05chromosomeD05:51069586..51069746 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D02chromosomeD02:55882710..55882884 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:26447459..26447618 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:11505871..11506043 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:60782689..60782849 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:50045671..50045831 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:27437711..27437870 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:12064412..12064584 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:64103398..64103558 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:45555738..45555907 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:51251059..51251222 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:28314505..28314667 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:61090088..61090248 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:44848373..44848542 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017706.1chromosomeCM017706.1:12383985..12384150 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:50339843..50340003 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017702.1chromosomeCM017702.1:55460362..55460536 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:26993292..26993451 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:65353946..65354106 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:45656652..45656820 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:51731169..51731329 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:28143054..28143213 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:66717878..66718038 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:28892163..28892325 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:29938158..29938314 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:82121472..82121632 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:45481890..45482050 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:17593880..17594037 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:45799080..45799240 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:35037966..35038138 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr09chromosomechr09:36873502..36873661 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:35850861..35851020 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:48656485..48656645 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:37931158..37931325 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:29135970..29136142 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:30702229..30702401 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:30722994..30723166 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:34620739..34620895 -Gossypium lobatum (D7) genome ISU_v1n/a
F06chromosomeF06:32319931..32320088 +Gossypium longicalyx (F1) genome NSF_v1n/a
F06chromosomeF06:15573703..15573869 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:21663655..21663822 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0230 ID=PGML0230; Name=PGML0230; organism=Gossypium raimondii; type=genetic_marker; length=161bp
CCATCTTCTTCTTCATGCCGTGAGAAAGAAAGAAAGAAACCCTTGAAAGA
TTTCAAACTTTTGGTCAACAATCGGTATGTTCAATTAAGTTATTTTCTTG
TAAATTTTATGTTTCTGAGGTCATGAGAGCTTGATTTAGCTAGCCCATTA
CCAATTTGCAA