PGML0229, PGML0229 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0229
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TG)18
Primer 1PGML0229_F: CAAGGGATTCAGATGAAATGG
Primer 2PGML0229_R: CATGGTGATTAATTCCTACGAACA
Product Length331
Publication[view all]
CommentBAC_ID=FITB5232.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:81572185..81572498 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:19109213..19109551 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:81394220..81394533 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:17878375..17878723 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:44417192..44417522 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:101169747..101170060 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:46395494..46395832 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:37375627..37375944 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:24843672..24843985 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:17176655..17176993 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:72167092..72167405 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:17856723..17857061 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:85314298..85314611 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:18297504..18297842 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:86825539..86825852 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:17824856..17825194 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:85421705..85422018 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:18454146..18454484 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:80624838..80625151 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:18408173..18408511 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:81546498..81546811 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:17710946..17711294 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:83352959..83353272 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:18178389..18178737 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:82858394..82858707 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:18077220..18077558 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:89694518..89694831 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:18408548..18408890 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:84547209..84547522 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:18239587..18239943 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:88420069..88420382 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:18545950..18546288 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:52046515..52046828 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:28128331..28128644 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:17727338..17727668 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:76504809..76505113 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:18011216..18011534 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:15748167..15748499 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:13156564..13156974 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:18163662..18164020 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:14502932..14503257 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:11362724..11363051 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11_6348159chromosomeChr11_6348159:3170..3495 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:82567543..82567852 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr10chromosomeChr10:114225750..114226073 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0229 ID=PGML0229; Name=PGML0229; organism=Gossypium raimondii; type=genetic_marker; length=331bp
CAAGGGATTCAGATGAAATGGAATGTTCACCATAAGATAACTGAATTTTA
TTTATAGCAATAGGAGGATGATTTTACAAAAAGGGGATGTTGAGTCTTTA
TGCAAGGTTTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGTGAAATA
AAAATCAAAGATAAGGACCTTTTACAACTAGATTTACCTTGATGGTAATG
AAAGATTGAAAATTATTATTTGATCCATTCTCGTAGTAAGGACTACCATG
ATGTTGTTAGTTTTAGTAGAACTTATCTTGTGAACAAGTACACGATGTCA
TTTGTTTTGTTCGTAGGAATTAATCACCATG