PGML0227, PGML0227 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0227
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GAAAGA)3
Primer 1PGML0227_F: TGGCCCGTATAAGTTTCCAG
Primer 2PGML0227_R: TGCATGCCTTCTCTTTCCTT
Product Length251
Publication[view all]
CommentBAC_ID=FITB5000.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:546279..546529 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:474859..475109 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:49694994..49695244 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:549484..549722 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr1chromosomeAt_chr1:104310902..104311152 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:496530..496780 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:531731..531981 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:680236..680486 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:401896..402146 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:412917..413167 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:410898..411148 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:534378..534628 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:651550..651800 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:641572..641822 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:549679..549935 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:825528..825778 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:50127026..50127276 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:587677..587921 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:589030..589273 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:596727..596972 -Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:385007..385275 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:577959..578201 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0227 ID=PGML0227; Name=PGML0227; organism=Gossypium raimondii; type=genetic_marker; length=251bp
TGGCCCGTATAAGTTTCCAGGTCAATCCACTTAATGTCTTTCTCAAAACC
AACACCTTGGTAGGTTCTCAGTCCAATCTGATTCAAACAACAATACTCAA
AACCTTCTTAAATAATTAATTTTTTAAAATAAATATGAAAAAGAAAGAGA
AAGAGAAAGGGAAAAGGAAAAGGGTAGTGTAAATTTTGAAAATTTCAAAA
GTTAAATATAGAAGATTCAAAAAGAAAAAAAAAGGAAAGAGAAGGCATGC
A