PGML0226, PGML0226 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0226
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TA)12
Primer 1PGML0226_F: ATAGTCGATCGAGTCTGCGG
Primer 2PGML0226_R: CATATCACAAATCAAATCCAAGAG
Product Length369
Publication[view all]
CommentBAC_ID=FITB5319.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:28526865..28527228 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018223.1chromosomeCM018223.1:28519095..28519454 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018223.1chromosomeCM018223.1:29309151..29309505 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018223.1chromosomeCM018223.1:28539755..28540112 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:23840463..23840835 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:23832672..23833038 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:54327466..54327824 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:28229290..28229680 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:17822698..17823356 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:54455734..54456096 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:41921230..41921590 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:50315016..50315376 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:58172871..58173230 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_02chromosomeD5_02:30736752..30737118 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_02chromosomeD5_02:30744502..30744867 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_13chromosomeD5_13:11122903..11123271 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_13chromosomeD5_13:30698212..30698574 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_13chromosomeD5_13:30705863..30706310 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_09chromosomeD5_09:23360709..23361074 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:52501132..52501504 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:52508866..52509228 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:21295895..21296255 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:14130248..14130610 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:14138026..14138388 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:36711289..36711796 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:22743465..22743831 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:42969323..42969681 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:42962016..42962373 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:15909621..15909980 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:26721877..26722236 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Gbar_D09chromosomeGbar_D09:29094502..29094865 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D09chromosomeGbar_D09:29861505..29861859 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D09chromosomeGbar_D09:29086734..29087092 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D09chromosomeGbar_D09:29107388..29107745 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold21764_objsupercontigscaffold21764_obj:381..738 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D09chromosomeD09:32660179..32660533 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:29443004..29443361 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017709.1chromosomeCM017709.1:30800116..30800470 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr11chromosomeChr11:22164590..22164962 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:22156815..22157181 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:51421063..51421563 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:55212763..55213121 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:39452406..39452767 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:54976835..54977199 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:41669708..41670067 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:36889661..36890020 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:32821556..32821925 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:32829284..32829655 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:11034110..11034476 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:30890057..30890418 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:53386591..53386963 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:53394271..53394634 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:35079872..35080522 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:23950183..23950564 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:22568679..22569047 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:42728524..42728881 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:15978861..15979220 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:5335004..5335361 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:12616534..12616893 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Sequence
>PGML0226 ID=PGML0226; Name=PGML0226; organism=Gossypium raimondii; type=genetic_marker; length=369bp
ATAGTCGATCGAGTCTGCGGATATCCGAGGTAAGTCTATTAGCTATTTAA
TGTCATAAAAATCAGTATATAGGTATGTATATGTTCTGTATTTTGATGAA
TTATAATTGAAAATATGTTGGTTGAAATAATTAAAAGTATGAGTGAATTA
TATGCATTATTGTTACATGTTCGAATAATAGGTATATACTTATATAGTCA
TTTGAATTTAGTTAAAGTATGAAGGTATATAAGTATATACATGTATAAAT
TATTAGATTAATCAAAGATATGTATAAGGTATATGTATATATATAAAAGG
GTTCGAATGATTATAAAAGTATATATATATATATATATATATAAACTCTT
GGATTTGATTTGTGATATG