PGML0224, PGML0224 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0224
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GGGCC)3,(GCCCG)3
Primer 1PGML0224_F: TTTATGAGGCCTTCATTGGC
Primer 2PGML0224_R: AATGGTGGTGCCATTCTGAG
Product Length198
Publication[view all]
CommentBAC_ID=FITB5109.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_698supercontigscaffold_698:20053..20250 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D13chromosomeD13:61366729..61366927 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D08chromosomeD08:44228937..44229136 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:54169882..54170080 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:41015861..41016060 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:23849985..23850183 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:7209665..7209852 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:51636748..51636946 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:56066877..56067074 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_12chromosomeD5_12:8198894..8199091 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:47101692..47101918 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:53071290..53071478 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_10chromosomeD5_10:9622985..9623171 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_09chromosomeD5_09:40449769..40449964 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:6182601..6182798 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:6844565..6844759 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:7200749..7200948 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:3380628..3380827 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_02chromosomeD5_02:428124..428344 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_12chromosomeD5_12:16816592..16816790 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_12chromosomeD5_12:4504246..4504444 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:9286059..9286256 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:62269579..62269777 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_10chromosomeD5_10:32041975..32042173 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_09chromosomeD5_09:32402642..32402830 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_08chromosomeD5_08:15676270..15676467 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:54571148..54571311 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:1736648..1736869 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:23248728..23248927 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:4116483..4116681 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:43645975..43646174 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:56670485..56670677 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:29846413..29846611 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold195165supercontigscaffold195165:50..248 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:57068284..57068482 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:40652985..40653184 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:52075433..52075632 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:43569634..43569833 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:53147148..53147346 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:61232614..61232812 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:44621859..44622058 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:54134775..54134973 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:60504237..60504435 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:43439421..43439620 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:40718591..40718790 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:53533397..53533595 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:30075830..30076023 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D08chromosomeGbar_D08:40954556..40954755 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:24304924..24305122 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:7715204..7715391 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:50968034..50968232 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:32863538..32863731 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D08chromosomeD08:43081674..43081873 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D05chromosomeD05:24116992..24117190 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D02chromosomeD02:7219309..7219496 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D12chromosomeD12:52086748..52086946 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:42462292..42462491 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:55295024..55295217 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:53471382..53471579 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:11198111..11198304 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:55125688..55125886 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:31014653..31014846 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017708.1chromosomeCM017708.1:41604968..41605167 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:24183118..24183316 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:52744568..52744766 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:61638390..61638588 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D08chromosomeD08:44038839..44039038 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:55817274..55817472 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:56039689..56039886 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:1676925..1677113 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:53233559..53233752 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:6182563..6182761 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:19266203..19266402 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:58977482..58977680 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:438614..438807 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:49585138..49585336 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:59752852..59753050 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:52711876..52712063 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:38635252..38635441 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:35720818..35721016 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:46734759..46734953 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:1743181..1743402 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:23229556..23229755 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Sequence
>PGML0224 ID=PGML0224; Name=PGML0224; organism=Gossypium raimondii; type=genetic_marker; length=198bp
TTTATGAGGCCTTCATTGGCGCCTAGACCTGTCCATGGGCCGGGCCGGGC
CTAAAAAATTTTCGGCCCGACTCCTAGGCCCGGGCCCGGCCCAAAATATG
GGCCTGAAATTTTGTCCAGGCCCGGCCCGGGCAAAAATCATAGGCCCAAG
CCCGGCCCGGCCCGACCCATTGGCGCCTCTCAGAATGGCACCACCATT