PGML0223, PGML0223 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0223
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTTTC)6
Primer 1PGML0223_F: CGTGACTAGGCTAAGGGTAGG
Primer 2PGML0223_R: TGTCCCAAACACTAGACTCGG
Product Length322
Publication[view all]
CommentBAC_ID=FITB5204.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:28911357..28911669 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D09chromosomeD09:23494722..23495038 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:24272461..24272786 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018223.1chromosomeCM018223.1:21356474..21356789 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:16228052..16228373 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:26007999..26008321 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold3358_A12supercontigscaffold3358_A12:8359..8696 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:26039929..26040241 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:22396570..22396886 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:23575074..23575390 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:50990142..50990450 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:7656273..7656597 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:13165585..13165883 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:40782886..40783171 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:23441223..23441539 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:22992676..22992992 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:21423028..21423344 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:27732237..27732548 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:24581281..24581606 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D09chromosomeGbar_D09:21967550..21967865 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:48471068..48471378 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:30139580..30139865 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:41298444..41298742 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:24458855..24459180 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D09chromosomeD09:24822253..24822568 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:7547863..7548187 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:28890524..28890836 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017633.1chromosomeCM017633.1:24449454..24449779 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017631.1chromosomeCM017631.1:22372303..22372619 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:22880436..22880741 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:7907314..7907637 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:24461032..24461357 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017709.1chromosomeCM017709.1:22534092..22534407 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:7663180..7663504 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:24348236..24348552 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:27140921..27141237 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:21461700..21462021 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:35706081..35706406 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:25835943..25836265 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:32218166..32218480 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:42646199..42646543 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:11920584..11920992 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:22292822..22293137 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:16167187..16167501 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0223 ID=PGML0223; Name=PGML0223; organism=Gossypium raimondii; type=genetic_marker; length=322bp
CGTGACTAGGCTAAGGGTAGGTAAAAGATAGATAAATTTAGGCTTAAAAC
TTTAGACTCAGTTTCAATTAGACCTTCAAAATATTTACGTTCAATATACC
AACTTATTTTTCTTTCACATGCTCTTTTATATATCTATTTTCTTTCAAGT
ACATATGTTCTTCTCTCTTTTTTTCTTTTTCTTTTCTTTTCTTTTCTTTT
TTTTTCACGAGCATTTTGCTGTATGTACTACAATTTTTTGAGCATTTGAT
ACTTCTTTTCAACTTCTCCAAACTTATTTTCAAATAATATTCTAAATAGT
ACCGAGTCTAGTGTTTGGGACA