PGML0221, PGML0221 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0221
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATG)5
Primer 1PGML0221_F: GGGTGGAAGCAACAAACATT
Primer 2PGML0221_R: TTGACCAACTTTATTATCACCATGA
Product Length372
Publication[view all]
CommentBAC_ID=FITB5162.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:53754781..53755152 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:52572027..52572399 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:47028542..47028912 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:9970995..9971364 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:119588921..119589287 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:14077850..14078221 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:51013544..51013915 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:52773417..52773788 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:54553719..54554090 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:54183530..54183901 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:51422175..51422546 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:52785238..52785610 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:53521854..53522226 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:53744254..53744625 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:55057236..55057607 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:53085790..53086162 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:54620797..54621168 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:42521431..42521802 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:51052518..51052891 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:39028132..39028651 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:34955960..34956329 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:51828816..51829185 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0221 ID=PGML0221; Name=PGML0221; organism=Gossypium raimondii; type=genetic_marker; length=372bp
GGGTGGAAGCAACAAACATTGCTTGCTATATTTTTAATAGAGTAATGATT
AGACATATTTTAAAGAAAACTCCATATGAACTCTTCAAAAATAAAAAGTC
TAACATTAGCTATTTTCATCCCTTTGGATGTAAGTATTTGTTTTAAATAA
TGATAAAGACAATCTTGGTATGCAAAAAGTGATGAAATAATTTTTCTTGG
TTATTTTTTAAATTCTAAAGCTTTTCGAGTTTTTAACAAAAGAACTTCAG
TAGTAGAAGAGTCTGTACATGTTGTTTTTTATGAATTTAACCTTCATCCT
AGAAAGGATTCTTGTATTGATCATGATGATGATGATGCAGAAATTTTTCA
TGGTGATAATAAAGTTGGTCAA