PGML0218, PGML0218 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0218
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AATA)4
Primer 1PGML0218_F: AACTACGTGATCTTCTGCGG
Primer 2PGML0218_R: TCCTTCCTTCTCCACAGTCAA
Product Length380
Publication[view all]
CommentBAC_ID=FITB5282.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:18778987..18779366 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:17542732..17543111 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:44774091..44774461 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr11chromosomeDt_chr11:16829107..16829486 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:17525068..17525447 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:17967479..17967858 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:17505883..17506262 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:18124037..18124416 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:18077948..18078327 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:17370132..17370511 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:17862655..17863034 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:17743510..17743889 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:17903549..17903928 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:18215721..18216100 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:17693911..17694293 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_11chromosomeChr_11:12931806..12932564 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:17844510..17844889 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:14279523..14279903 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:11159618..11160059 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:115359366..115359737 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0218 ID=PGML0218; Name=PGML0218; organism=Gossypium raimondii; type=genetic_marker; length=380bp
AACTACGTGATCTTCTGCGGTAATTAAAGAATTTATATAGATATCTGCAA
AAACAAATAAAATTTTAATATTCAACTTAACAAATAAATAATATAAAAAT
CACGCTTAGTACTAATACTTAAACTATTAATTTTATCTCAATTTACCTTA
GAAAATAATATCAACCAATAAAAATGTGAAATATAGAAAAACTACATATA
GTTCAATGGATATAGTCCAAAGGCTAGTATACTTATAAAGCTGAAAACAA
AGCCTTGAATACCTGAAAAAATTCAAACTTTTAACACAATTCTAAACTAT
TAATAATAATTATAATAATAGCAATAAATAAATAAATACCTGGTTTGTTT
TGGGAGATTTTGACTGTGGAGAAGGAAGGA