PGML0217, PGML0217 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0217
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TA)16
Primer 1PGML0217_F: TCAAGAATCATGCCATGCAA
Primer 2PGML0217_R: AAGTGATATCCGCACTTCCG
Product Length308
Publication[view all]
CommentBAC_ID=FITB5002.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:54873860..54874167 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:54742754..54743054 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:52760796..52761103 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018218.1chromosomeCM018218.1:52627326..52627628 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:1559726..1560033 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:50915787..50916094 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_04chromosomeD10_04:51094757..51095057 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_04chromosomeD10_04:50962818..50963118 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:3559870..3560177 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:3696932..3697232 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:49812161..49812468 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:49674769..49675069 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:54669886..54670193 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:54539370..54539669 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:55311554..55311861 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:55180591..55180891 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:54513396..54513703 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:54382568..54382868 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:52588217..52588524 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:52441878..52442179 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:50858023..50858330 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:50724571..50724873 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:55749942..55750249 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D04chromosomeD04:55613491..55613793 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:52778025..52778332 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:52646989..52647291 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:55685319..55685626 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017652.1chromosomeCM017652.1:55553999..55554302 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:52846342..52846644 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:56438424..56438731 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:56307318..56307618 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:1570809..1571116 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_12chromosomeChr_12:22634074..22634381 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:52787798..52788086 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:20708855..20709166 -Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0217 ID=PGML0217; Name=PGML0217; organism=Gossypium raimondii; type=genetic_marker; length=308bp
TCAAGAATCATGCCATGCAATTAAAATTAATTTCCTATACATTAACATAT
ATAAATATATATACATATATAAATATATACTACTAATATTTCATTCAATC
ACCATATTCAAATATTGTTTCCATAATAACTTTATTGAAACATCAATTCC
ACAAGTTTCAATTTACTTACCTATGCCACTTTCATTCACTTACCTGATAT
TGCTATTGCCCAAATATAGACTCAACAGAATATAATAGGATATACAGAAA
TATAAATAAGATGCACCTAAGTGTCATTATTCTTCGCACGGAAGTGCGGA
TATCACTT