PGML0240, PGML0240 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0240
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTTTT)3
Primer 1PGML0240_F: AACCCTGAGCATTTATACATTGTG
Primer 2PGML0240_R: TTTCATTTGTCACCGTTTCATC
Product Length209
Publication[view all]
CommentBAC_ID=FITB1534.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:64305457..64305653 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:59998401..59998597 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:58413994..58414202 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:60375283..60375491 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1451.1supercontigscaffold1451.1:33505..33701 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:60114795..60114991 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:62896379..62896575 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:64022970..64023166 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:63491876..63492072 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:59739439..59739635 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:59878676..59878872 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:60833245..60833441 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:60557390..60557586 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:64025724..64025920 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:60361078..60361274 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:64657540..64657736 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:59800909..59801105 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:44910198..44910401 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr13chromosomeChr13:62698211..62698418 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:32805101..32805297 -Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0240 ID=PGML0240; Name=PGML0240; organism=Gossypium raimondii; type=genetic_marker; length=209bp
AACCCTGAGCATTTATACATTGTGTAAATTGGTATTTTCTTTTCCCTTTT
CTTTTCTTTTGTGACATTGAGGGTTAATTTTAAAAGAAAGAAAAAGATAA
AAATTGTTATATTGGATTTTTTGGGATTTCTATTTTTGGTAATTTTCGAT
CAAAATTCGACGATAAAGTTATTTATTTAACTTTTTAGATGAAACGGTGA
CAAATGAAA