PGML0239, PGML0239 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0239
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)12
Primer 1PGML0239_F: AAGCAAGATCTGTTGCGGAG
Primer 2PGML0239_R: TTCAAGTGGCTGCAATCAAG
Product Length201
Publication[view all]
CommentBAC_ID=FITB1238.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:68935731..68935929 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:110085079..110085257 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:65191105..65191307 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:65254886..65255075 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:110106373..110106551 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:3342521..3342720 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:3494259..3494466 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:3602500..3602697 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:3464320..3464509 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:3520066..3520247 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:5125109..5125287 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:3643547..3643725 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:4308138..4308341 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:4404746..4404935 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:61876271..61876469 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:89007044..89007222 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:68833771..68833969 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D11chromosomeGhir_D11:69344837..69345036 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:119007896..119008074 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:119273249..119273389 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:119075719..119075874 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:117350506..117350684 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:67907715..67908182 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:115223866..115224044 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:111895610..111895788 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:64653496..64653963 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:65240664..65240853 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:108934398..108934576 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:109355274..109355462 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:109041917..109042072 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold140_obj_D11supercontigscaffold140_obj_D11:68280..68469 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D11chromosomeD11:68109949..68110138 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D11chromosomeD11:68023736..68023925 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:112207218..112207396 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:67047861..67048057 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017633.1chromosomeCM017633.1:67080898..67081092 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:116141372..116141550 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:122049749..122049927 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017659.1chromosomeCM017659.1:69551236..69551438 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017659.1chromosomeCM017659.1:69479932..69480130 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:109845690..109845868 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:119267395..119267573 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D11chromosomeD11:68420206..68420404 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:127227247..127227425 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:127807141..127807321 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:126184484..126184662 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Contig00131chromosomeContig00131:5913..6094 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Contig00024chromosomeContig00024:37530..37730 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Contig00024chromosomeContig00024:75720..75927 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Contig00322chromosomeContig00322:45916..46112 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Contig00322chromosomeContig00322:18134..18332 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Contig00322chromosomeContig00322:37664..37853 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr07chromosomechr07:47115132..47115534 -Gossypium armourianum (D2-1) genome ISU_v1n/a
F11chromosomeF11:96061690..96061882 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0239 ID=PGML0239; Name=PGML0239; organism=Gossypium raimondii; type=genetic_marker; length=201bp
AAGCAAGATCTGTTGCGGAGCCAGAAGACAAAATTTGCTAAATATGACAC
TTTTCAATTAAACACATAGGATTAGGAAAAAAAAATAGTTACACATACAT
ATATATATATATATATATATATCCAAAAAACTAGAAAATAGAGAAGAAAA
GAAAGAATTACCTGTTATTTAAATGCCATCCCTTGATTGCAGCCACTTGA
A