PGML0238, PGML0238 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0238
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTTTT)3
Primer 1PGML0238_F: TTTGTTAATTTGATCACCACCG
Primer 2PGML0238_R: AAGAAGTGTCCATTGGCGTC
Product Length246
Publication[view all]
CommentBAC_ID=FITB1350.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:17584905..17585147 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:16917481..16917723 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:16011405..16011650 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr1chromosomeDt_chr1:50882795..50883037 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:17018803..17019045 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:17418427..17418669 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:22338726..22338939 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:16699635..16699877 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:17389629..17389871 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:16942343..16942585 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:17359169..17359411 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:16972024..16972266 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:17353528..17353771 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:17596571..17596812 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:17284787..17285030 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:17599215..17599457 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:36904439..36904684 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:17092617..17092849 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:14508727..14508962 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:16950022..16950237 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:10868789..10869126 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0238 ID=PGML0238; Name=PGML0238; organism=Gossypium raimondii; type=genetic_marker; length=246bp
TTTGTTAATTTGATCACCACCGTTAAAGAAATTGAACAAATTAGTCATTC
CACAGTTAAATTTAACAGAATACCCTCCTTTTCTTTTCTTTTTTTTTTTT
ATCTTTTATCTTTTTTTTTCTCTTTCTCTTCCTTTTAACTCAAAAACCCT
AGTTGTCATCTTCTTTAAAGATGTCGTTGCTTCCTCTCTTAAACCACCAT
TGATCATCGTTGTCTTGTTAATGAACGACGCCAATGGACACTTCTT