PGML0237, PGML0237 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0237
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(A)15
Primer 1PGML0237_F: CCTGCAGCAGCAGCTATCTA
Primer 2PGML0237_R: TTTGGGTTCTTGGAGGTTGA
Product Length236
Publication[view all]
CommentBAC_ID=FITB1525.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:7224239..7224474 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:7029330..7029565 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:9268966..9269204 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:50429886..50430121 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:15049422..15049657 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:97587561..97587799 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:5055737..5055975 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr8chromosomeAt_chr8:72934751..72934989 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:4132142..4132377 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:7259302..7259537 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:9401758..9401996 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:7211000..7211235 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:9489784..9490022 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:7052016..7052251 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:9105164..9105402 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:7215987..7216222 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:9488736..9488974 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:7173871..7174106 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:9467241..9467479 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:6959050..6959285 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:9528550..9528788 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:6922584..6922819 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:9219203..9219441 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:7009550..7009785 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:9222226..9222464 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:7094327..7094563 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:9796775..9797013 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:6894053..6894288 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:9192025..9192263 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:7383989..7384224 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:9517298..9517536 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:9928976..9929214 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:9636259..9636497 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:6975417..6975652 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:10599267..10599508 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:7116898..7117130 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:6584493..6584731 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:7297294..7297530 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:6174492..6174887 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:4551828..4552063 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:5780173..5780409 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:10888126..10888355 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:8460689..8460927 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0237 ID=PGML0237; Name=PGML0237; organism=Gossypium raimondii; type=genetic_marker; length=236bp
CCTGCAGCAGCAGCTATCTACAAAGCCAAAAAAAAAAAAAAAGATAGTGG
GACAAAGAGCAGGATATATTTAAGATAATAACCTCAATTGCAAACATCGG
ATTTGGAGGCAAAGTTTACAGATCTACAGGAGACATGCTATCAAAATTTA
GTAGTACCAATAATGCCAAAGAAACTACCAAGAACTACCAAAAAGAACTC
AATATAACCAGAATTTTCAACCTCCAAGAACCCAAA