PGML0235, PGML0235 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0235
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTT)5
Primer 1PGML0235_F: GCTCCATTGAAGACTGCCTC
Primer 2PGML0235_R: GGGCTGCTGATGGAGTTAAG
Product Length231
Publication[view all]
CommentBAC_ID=FITB1260.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:46598209..46598442 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:66492949..66493179 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:43792334..43792564 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:66359301..66359531 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:23077538..23077768 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:31742155..31742391 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:95413050..95413277 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:22986602..22986832 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:50745348..50745578 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:75084361..75084594 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:98763352..98763582 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:44167235..44167468 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:61045171..61045401 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:46063998..46064231 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:71057923..71058153 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:46714210..46714443 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:70588172..70588402 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:47470020..47470253 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:68200109..68200339 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:44821487..44821720 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:64473883..64474113 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:44436325..44436555 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:66164964..66165194 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:45700456..45700686 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:67627055..67627285 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:46551169..46551402 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:67526732..67526962 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:47737509..47737739 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:71455398..71455628 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:45215856..45216089 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:67143411..67143641 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:48214957..48215190 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:71408846..71409076 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:40270792..40271022 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:39229099..39229326 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:40717630..40717860 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:32988938..32989168 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:42969397..42969627 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:31516559..31516789 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:27795109..27795339 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:44328240..44328467 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:28503654..28503884 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:23821642..23821872 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:29751018..29751248 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:86563248..86563478 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:76821274..76821504 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:74958339..74958569 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0235 ID=PGML0235; Name=PGML0235; organism=Gossypium raimondii; type=genetic_marker; length=231bp
GCTCCATTGAAGACTGCCTCAAATCTTTCTTGGAACTCAGAATTTGCTTC
AACTCTTCCTGTGTCACCACAAGTCTTATTCTCACCACCCCATTTTTGGA
TTCACCTTGTTTCCCTGATCTATCATCACCACTGTTTTCTTCATTTAAGT
TGAATCTCACCACCTTCTTCTTCTTCTTATTCGTTTTCTTCTCCATGTTG
TTGTTGTTGGTCTTAACTCCATCAGCAGCCC