GWAS0003504 | Cottongen

Genome Location

GWAS Overview


GWAS Label	GWAS0003504 [ MapViewer ]
Published Symbol	UHML
Trait Name	upper half mean length
Trait Alias	N/A
GWAS Marker	AD1-NBI_SNP_D05_5060321
GWAS Study	AD1-NBI_quality_USDANO-Thyssen-2019_GWAS
Genome Assembly	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Statistical Mothod	N/A
Experimental Model	N/A
GWAS Panel	N/A
LOD	N/A
P Value	4.93E-5
R2	N/A
Unique key	3792-AD1-NBI_MAGIC-20805\|UHML\|FLO-MSU-STV\|AD1-NBI_SNP_D05_5060321
MAF	0.384
Allele	C/T
LgP	4.3071530807228
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Cotton Trait Ontology**
Term	Definition
44:upper half mean length	upper half mean length

Genome Location


Name	Type	Location	Analysis	MapViewer
D05	chromosome	D05:5060321..5060321	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	View

Publications


Year	Publication
2019	Thyssen GN, Jenkins JN, McCarty JC, Zeng L, Campbell BT, Delhom CD, Islam MS, Li P, Jones DC, Condon BD, Fang DD. Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.). Theoretical and applied genetics. 2019; 132(4):989-999.

Properties


Property Name	Value
Unique key	3792-AD1-NBI_MAGIC-20805\|UHML\|FLO-MSU-STV\|AD1-NBI_SNP_D05_5060321
Published symbol	UHML
MAF	0.384
Allele	C/T
P value	4.93E-5
LgP	4.3071530807228