Gossypium mustelinum (AD4) genome JGI Assembly v1.1

Genome Overview
Analysis NameGossypium mustelinum (AD4) genome JGI Assembly v1.1
MethodPacBio Sequel, Mecat v. 1.0
SourceGossypium_mustelinum_v1.1
Date performed2019-09-19

About the assembly

The WGS assembly of Gossypium mustelinum v1.1 was isolated from '1408120.09' with 94.12x of the genome coverage.  The data was submitted by JGI (US DOE Joint Genome Institute) and stored under NCBI BioProject PRJNA525892.

 

Summary of the Assembly  
Total sequence length 2,315,094,184
Total ungapped length 2,297,344,504
Gaps between scaffolds 1,763
Number of scaffolds 2,146
Scaffold N50 2,312,865
Scaffold L50 272
Number of contigs 2,146
Contig N50 272
Contig L50 2,146
Total number of chromosomes and plasmids 26
Number of component sequences (WGS or clone) 2,146
Properties
Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome
Short Name_JGI-AD4_v1.1
Assembly

The chromosomes (pseudomolecules) for Gossypium mustelinum genome. These files belong to the JGI Assembly v1.1

Chromosomes (FASTA format) G.mustelinum_JGI-AD4_assembly_v1.1.fa.gz
Genes

The predicted gene model, their alignments and proteins for G. mustelinum genome. These files belong to the JGI-AD4 Assembly v1.1

Predicted gene models with exons (GFF3 format) G.mustelinum_JGI-AD4_v1.1_protein_gff.gz
Protein sequences (FASTA format) G.mustelinum_JGI-AD4_v1.1_protein.fasta.gz
Downloads

All annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.  Alternatively, you can use the FTP repository for bulk download.