Gossypium stocksii (E1) genome NSF_v1
We report a high-quality de novo genome assembly for G. stocksii (E1). This genome was initially assembled using 58x coverage of PacBio reads, yielding a draft assembly of 316 contigs with N50=17.8 Mb. HiC and Bionano reads were used to order and orient contigs into a final assembly consisting of 13 chromosomes (average length =110 Mb) and containing only 5.7 kb (<0.001%) gap sequence within the chromosomal scaffolds. The assembly has a total length of 1424 Mb, ~93% of the estimated 1359 Mb genome (Hendrix and Stewart 2005).
** G. anomalum is 1359 Mb (Hendrix and Stewart, 2005)
Corrinne E Grover, Daojun Yuan, Mark A Arick, II, Emma R Miller, Guanjing Hu, Daniel G Peterson, Jonathan F Wendel, Joshua A Udall, The Gossypium stocksii genome as a novel resource for cotton improvement, G3 Genes|Genomes|Genetics, Volume 11, Issue 7, July 2021, jkab125, https://doi.org/10.1093/g3journal/jkab125
Additional information about this analysis:
The chromosomes (pseudomolecules) and scaffolds for Gossypium stocksii '(E1)' genome. This file belongs to the NSF G. stocksii Assembly v1.0
The predicted gene model, their alignments and proteins for Gossypium stocksii '(E1)' genome. These files belong to the NSF G. stocksii Assembly v1.0