Peer-reviewed papers citing CottonGen in 2015 (29) with links to publications.
- Shang, L., Liang, Q., Wang, Y., Wang, X., Wang, K., Abduweli, A., ... & Hua, J. (2015). Identification of stable QTLs controlling fiber traits properties in multi-environment using recombinant inbred lines in Upland cotton (Gossypium hirsutum L.). Euphytica, 205, 877-888.
Cited By - Hulse-Kemp, A. M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D. D., ... & Stelly, D. M. (2015). Development of a 63K SNP array for cotton and high-density mapping of intraspecific and interspecific populations of Gossypium spp. G3: Genes, Genomes, Genetics, 5(6), 1187-1209.
Cited By - Said, J. I., Song, M., Wang, H., Lin, Z., Zhang, X., Fang, D. D., & Zhang, J. (2015). A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum and interspecific G. hirsutum× G. barbadense populations. Molecular Genetics and Genomics, 290, 1003-1025.
Cited By - Said, J. I., Knapka, J. A., Song, M., & Zhang, J. (2015). Cotton QTLdb: a cotton QTL database for QTL analysis, visualization, and comparison between Gossypium hirsutum and G. hirsutum× G. barbadense populations. Molecular Genetics and Genomics, 290, 1615-1625.
Cited By - Grover, C. E., Gallagher, J. P., Jareczek, J. J., Page, J. T., Udall, J. A., Gore, M. A., & Wendel, J. F. (2015). Re-evaluating the phylogeny of allopolyploid Gossypium L. Molecular Phylogenetics and Evolution, 92, 45-52.
Cited By - Wang, Q., Fang, L., Chen, J., Hu, Y., Si, Z., Wang, S., ... & Zhang, T. (2015). Genome-wide mining, characterization and development of microsatellite markers in Gossypium species. Scientific reports, 5(1), 10638.
Cited By - Dereeper, A., Bocs, S., Rouard, M., Guignon, V., Ravel, S., Tranchant-Dubreuil, C., ... & Droc, G. (2015). The coffee genome hub: a resource for coffee genomes. Nucleic acids research, 43(D1), D1028-D1035.
Cited By - Shi, G., Guo, X., Guo, J., Liu, L., & Hua, J. (2015). Analyzing serial cDNA libraries revealed reactive oxygen species and gibberellins signaling pathways in the salt response of Upland cotton (Gossypium hirsutum L.). Plant cell reports, 34, 1005-1023.
Cited By - Xu, Z., Yu, J., Kohel, R. J., Percy, R. G., Beavis, W. D., Main, D., & John, Z. Y. (2015). Distribution and evolution of cotton fiber development genes in the fibreless Gossypium raimondii genome. Genomics, 106(1), 61-69.
Cited By - Ashrafi, H., Hulse‐Kemp, A. M., Wang, F., Yang, S. S., Guan, X., Jones, D. C., ... & Van Deynze, A. (2015). A long‐read transcriptome assembly of cotton (Gossypium hirsutum L.) and intraspecific single nucleotide polymorphism discovery. The plant genome, 8(2), plantgenome2014-10.
Cited By - Yan, Q., Liu, H. S., Yao, D., Li, X., Chen, H., Dou, Y., ... & Xiao, Y. H. (2015). The basic/helix-loop-helix protein family in Gossypium: reference genes and their evolution during tetraploidization. PloS one, 10(5), e0126558.
Cited By - Zhang, L., Guo, J., You, Q., Yi, X., Ling, Y., Xu, W., ... & Su, Z. (2015). GraP: platform for functional genomics analysis of Gossypium raimondii. Database, 2015, bav047.
Cited By - Logan‐Young, C. J., Yu, J. Z., Verma, S. K., Percy, R. G., & Pepper, A. E. (2015). SNP discovery in complex allotetraploid genomes (Gossypium spp., Malvaceae) using genotyping by sequencing. Applications in Plant Sciences, 3(3), 1400077.
Cited By - Wang, H., Jin, X., Zhang, B., Shen, C., & Lin, Z. (2015). Enrichment of an intraspecific genetic map of upland cotton by developing markers using parental RAD sequencing. DNA Research, 22(2), 147-160.
Cited By - Wang, H., Huang, C., Guo, H., Li, X., Zhao, W., Dai, B., ... & Lin, Z. (2015). QTL mapping for fiber and yield traits in upland cotton under multiple environments. PLoS One, 10(6), e0130742.
Cited By - Feng, X., Keim, D., Wanjugi, H., Coulibaly, I., Fu, Y., Schwarz, J., ... & Cho, S. (2015). Development of molecular markers for genetic male sterility in Gossypium hirsutum. Molecular Breeding, 35, 1-9.
Cited By - Yang, X., Zhou, X., Wang, X., Li, Z., Zhang, Y., Liu, H., ... & Ma, Z. (2015). Mapping QTL for cotton fiber quality traits using simple sequence repeat markers, conserved intron-scanning primers, and transcript-derived fragments. Euphytica, 201, 215-230.
Cited By - Lu, C., Zou, C., Zhang, Y., Yu, D., Cheng, H., Jiang, P., ... & Song, G. (2015). Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in diploid cottons (Gossypium arboreum L. and Gossypium raimondii Ulbrich). BMC genomics, 16(1), 1-12.
Cited By - Abdelraheem, A., Hughs, S. E., Jones, D. C., & Zhang, J. (2015). Genetic analysis and quantitative trait locus mapping of PEG‐induced osmotic stress tolerance in cotton. Plant Breeding, 134(1), 111-120.
Cited By - Hinze, L. L., Fang, D. D., Gore, M. A., Scheffler, B. E., Yu, J. Z., Frelichowski, J., & Percy, R. G. (2015). Molecular characterization of the Gossypium diversity reference set of the US national cotton germplasm collection. Theoretical and Applied Genetics, 128, 313-327.
Cited By - Kumar, S., Pandey, P., Kumar, K., Rajamani, V., Padmalatha, K. V., Dhandapani, G., ... & Reddy, V. S. (2015). Delineating the glycoproteome of elongating cotton fiber cells. Data in Brief, 5, 717-725.
Cited By - Liang, Q., Shang, L., Wang, Y., & Hua, J. (2015). Partial dominance, overdominance and epistasis as the genetic basis of heterosis in upland cotton (Gossypium hirsutum L.). PLoS One, 10(11), e0143548.
Cited By - Zhang, T., Hu, Y., Jiang, W., Fang, L., Guan, X., Chen, J., ... & Chen, Z. J. (2015). Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nature biotechnology, 33(5), 531-537.
Cited By - Zhang, X., Dou, L., Pang, C., Song, M., Wei, H., Fan, S., ... & Yu, S. (2015). Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Molecular Genetics and Genomics, 290, 115-126.
Cited By - Hu, H., Yu, D., & Liu, H. (2015). Bioinformatics analysis of small RNAs in pima (Gossypium barbadense L.). PLoS One, 10(2), e0116826.
Cited By - Huang, J., Pang, C., Fan, S., Song, M., Yu, J., Wei, H., ... & Yu, S. (2015). Genome-wide analysis of the family 1 glycosyltransferases in cotton. Molecular Genetics and Genomics, 290, 1805-1818.
Cited By - Wang, C., Ulloa, M., Shi, X., Yuan, X., Saski, C., Yu, J. Z., & Roberts, P. A. (2015). Sequence composition of BAC clones and SSR markers mapped to Upland cotton chromosomes 11 and 21 targeting resistance to soil-borne pathogens. Frontiers in plant science, 6, 791.
Cited By - Wagner, T. A., Liu, J., Puckhaber, L. S., Bell, A. A., Williams, H., & Stipanovic, R. D. (2015). RNAi construct of a cytochrome P450 gene CYP82D109 blocks an early step in the biosynthesis of hemigossypolone and gossypol in transgenic cotton plants. Phytochemistry, 115, 59-69.
Cited By - Hernandez-Gomez, M. C., Runavot, J. L., Guo, X., Bourot, S., Benians, T. A., Willats, W. G., ... & Knox, J. P. (2015). Heteromannan and heteroxylan cell wall polysaccharides display different dynamics during the elongation and secondary cell wall deposition phases of cotton fiber cell development. Plant and Cell Physiology, 56(9), 1786-1797.
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