Expression: G. hirsutum root development genes

Overview
Analysis NameExpression: G. hirsutum root development genes
MethodIllumina NovaSeq 6000
SourcePRJNA816288
Date performed2022-03-15

This data is from the following manuscript:  Cui Z, Liu S, Ge C, Shen Q, Zhang S, Ma H, Liu R, Zhao X, Liu R, Li P, Wang H, Wu Q, Pang C, Chen J. Genome-wide association study reveals that GhTRL1 and GhPIN8 affect cotton root development. Theoretical and applied genetics. 2022 Aug 14; 135(9):3161-3176. NCBI BioProject PRJNA816288.  Expression values are in FPKM.

 

Isolate name BioSample name cultivar tissue age ecotype
 U-4   c193-1-4  Ningmian22  root system   4 days after sowing  short root
 U-8   c193-2-6  Ningmian22  root system   8 days after sowing  short root
 U-12   c193-4-6  Ningmian22  root system  12 days after sowing  short root
 U-16   c193-5-6  Ningmian22  root system  16 days after sowing  short root
 F-4   c12-1-4  Liaomian6hao  root system    4 days after sowing  long root
 F-8   c12-2-6  Liaomian6hao  root system    8 days after sowing  long root
 F-12   c12-4-6  Liaomian6hao  root system   12 days after sowing  long root
 F-16   c12-5-6  Liaomian6hao  root system   16 days after sowing  long root

 

Properties
Additional information about this analysis:
Property NameValue
Data source filepublic://expression/6511fccf080aa_p22997_EXP_TSV_0925.txt
Publication

Cui Z, Liu S, Ge C, Shen Q, Zhang S, Ma H, Liu R, Zhao X, Liu R, Li P, Wang H, Wu Q, Pang C, Chen J. Genome-wide association study reveals that GhTRL1 and GhPIN8 affect cotton root development. Theoretical and applied genetics. 2022 Aug 14; 135(9):3161-3176